PDB Chemical Component UNP

Ideal Model

Chemical Description

Name 5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]uridine
Formula C9 H16 N3 O14 P3
Formal charge 0
Molecular weight 483.156 g/mol
Component type NON-POLYMER

Chemical features

Atom count 45
Chiral atom count 6
Chiral atoms PB PA C4' C3' C2' C1'
Bond count 46
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]uridine
Systematic name (OpenEye OEToolkits) [[[[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]amino]phosphonic acid

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P@](O)(=O)O[P@](O)(=O)N[P](O)(O)=O)N2C=CC(=O)NC2=O
SMILES (CACTVS) O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)N2C=CC(=O)NC2=O
Stereo SMILES (OpenEye) C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)O[P@](=O)(NP(=O)(O)O)O)O)O
InChI descriptor InChI=1S/C9H16N3O14P3/c13-5-1-2-12(9(16)10-5)8-7(15)6(14)4(25-8)3-24-29(22,23)26-28(20,21)11-27(17,18)19/h1-2,4,6-8,14-15H,3H2,(H,22,23)(H,10,13,16)(H4,11,17,18,19,20,21)/t4-,6-,7-,8-/m1/s1
InChIKey descriptor MCBVWUSULWKVON-XVFCMESISA-N

Status Information

Last modified 2013-07-12
Created 2008-06-30
Release status REL
Model PDB code 3DIU
Processing site PDBJ