PDB Chemical Component UNP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for UNP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O2G PG 1.503 1.480
PG O3G 1.505 1.610
PG O1G 1.541 1.610
PG N2B 1.668 1.683
N2B PB 1.671 1.683
PB O1B 1.546 1.610
PB O3B 1.507 1.480
PB O3A 1.686 1.610
O3A PA 1.694 1.610
PA O1A 1.517 1.609
PA O2A 1.505 1.480
PA O5' 1.641 1.610
O5' C5' 1.435 1.429
C5' C4' 1.524 1.530
C4' C3' 1.523 1.545
C4' O4' 1.455 1.444
C3' O3' 1.415 1.429
C3' C2' 1.534 1.546
C2' O2' 1.414 1.429
C2' C1' 1.551 1.545
O4' C1' 1.425 1.444
C1' N1 1.508 1.465
N1 C2 1.363 1.346
N1 C6 1.364 1.369
C2 O2 1.273 1.216
C2 N3 1.366 1.346
C6 C5 1.395 1.350
C5 C4 1.427 1.417
C4 N3 1.343 1.348
C4 O4 1.260 1.217
O3G HO3G 0.950 0.967
O1G HO1G 0.950 0.967
N2B HN2B 1.000 1.009
O1B HO1B 0.950 0.968
O1A HO1A 0.951 0.967
C5' H5' 1.100 1.090
C5' H5'A 1.100 1.089
C4' H4' 1.100 1.090
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.967
C1' H1' 1.100 1.090
C6 H6 1.080 1.080
C5 H5 1.080 1.080
N3 HN3 1.000 0.970

Bond Angles for UNP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O2G PG O3G 116.3 109.5
O2G PG O1G 111.7 109.5
O2G PG N2B 110.9 109.5
O3G PG O1G 112.1 109.5
O3G PG N2B 105.1 109.5
PG O3G HO3G 109.5 114.0
O1G PG N2B 99.0 109.5
PG O1G HO1G 109.5 114.0
PG N2B PB 132.8 111.0
PG N2B HN2B 102.3 111.0
N2B PB O1B 103.7 109.5
N2B PB O3B 107.1 109.5
N2B PB O3A 112.1 109.5
PB N2B HN2B 102.3 111.0
O1B PB O3B 121.8 109.5
O1B PB O3A 111.3 109.5
PB O1B HO1B 109.5 114.0
O3B PB O3A 101.0 109.4
PB O3A PA 129.5 134.0
O3A PA O1A 104.4 109.5
O3A PA O2A 103.7 109.4
O3A PA O5' 111.2 109.5
O1A PA O2A 122.5 109.5
O1A PA O5' 106.6 109.5
PA O1A HO1A 109.5 114.0
O2A PA O5' 108.2 109.5
PA O5' C5' 125.7 123.0
O5' C5' C4' 112.4 109.4
O5' C5' H5' 108.5 109.5
O5' C5' H5'A 107.8 109.5
C5' C4' C3' 112.0 110.3
C5' C4' O4' 108.5 110.4
C4' C5' H5' 108.5 109.5
C4' C5' H5'A 107.8 109.5
C5' C4' H4' 107.4 110.3
C3' C4' O4' 106.1 104.8
C4' C3' O3' 108.4 110.5
C4' C3' C2' 103.5 104.0
C3' C4' H4' 109.8 110.4
C4' C3' H3' 114.7 110.5
C4' O4' C1' 114.0 105.2
O4' C4' H4' 113.1 110.5
O3' C3' C2' 111.6 110.5
O3' C3' H3' 107.0 110.5
C3' O3' HO3' 109.5 114.0
C3' C2' O2' 111.3 110.5
C3' C2' C1' 105.9 104.0
C2' C3' H3' 111.7 110.6
C3' C2' H2' 111.9 110.5
O2' C2' C1' 113.0 110.5
O2' C2' H2' 104.6 110.5
C2' O2' HO2' 109.5 114.0
C2' C1' O4' 103.0 104.8
C2' C1' N1 117.4 110.4
C1' C2' H2' 110.2 110.6
C2' C1' H1' 108.9 110.4
O4' C1' N1 110.0 110.3
O4' C1' H1' 116.5 110.4
C1' N1 C2 118.3 119.7
C1' N1 C6 122.4 119.7
N1 C1' H1' 101.8 110.4
C2 N1 C6 119.3 120.6
N1 C2 O2 122.0 119.5
N1 C2 N3 120.6 121.0
N1 C6 C5 121.6 119.7
N1 C6 H6 119.2 120.1
O2 C2 N3 117.3 119.5
C2 N3 C4 121.8 120.3
C2 N3 HN3 119.1 119.9
C6 C5 C4 117.4 119.1
C5 C6 H6 119.2 120.1
C6 C5 H5 121.3 120.4
C5 C4 N3 119.2 119.4
C5 C4 O4 123.8 120.3
C4 C5 H5 121.3 120.5
N3 C4 O4 116.9 120.3
C4 N3 HN3 119.1 119.9
H5' C5' H5'A 111.8 109.4

Torsion Angles for UNP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O3G PG O2G O1G 130.5 240.0
O3G PG O2G N2B 240.0 120.0
O2G PG O3G HO3G 240.8 180.0
O1G PG O2G N2B 109.5 240.0
O2G PG O1G HO1G 304.3 300.0
O2G PG N2B PB 266.4 60.0
O2G PG N2B HN2B 26.5 183.9
O2G PG O3G O1G 229.7 120.0
O2G PG O3G N2B 123.1 240.0
O1G PG O3G N2B 253.4 120.0
O3G PG O1G HO1G 171.7 60.0
O3G PG N2B PB 32.9 300.0
O3G PG N2B HN2B 153.0 63.9
O2G PG O1G O3G 132.6 240.0
O2G PG O1G N2B 243.1 120.0
O3G PG O1G N2B 110.5 240.0
O1G PG O3G HO3G 11.1 60.1
O1G PG N2B PB 148.9 180.0
O1G PG N2B HN2B 269.0 303.9
O2G PG N2B O3G 233.5 120.0
O2G PG N2B O1G 117.5 240.0
O3G PG N2B O1G 244.0 120.0
N2B PG O3G HO3G 117.7 300.1
N2B PG O1G HO1G 61.2 180.0
PG N2B PB O1B 18.0 300.0
PG N2B PB O3B 147.9 60.0
PG N2B PB O3A 257.8 180.0
PB N2B PG HN2B 240.0 236.1
PG N2B PB HN2B 120.0 123.9
O1B PB N2B O3B 230.1 240.0
O1B PB N2B O3A 120.1 120.0
N2B PB O1B HO1B 230.9 300.0
O3B PB N2B O3A 250.1 240.0
N2B PB O3A PA 97.3 180.0
N2B PB O1B O3B 120.4 120.0
N2B PB O1B O3A 239.3 240.0
O1B PB N2B HN2B 258.0 176.1
O3B PB O1B O3A 118.9 120.0
O1B PB O3A PA 341.7 59.9
N2B PB O3B O1B 241.2 240.0
N2B PB O3B O3A 117.5 120.0
O3B PB N2B HN2B 27.9 296.1
O1B PB O3B O3A 236.2 240.0
O3B PB O1B HO1B 110.5 180.0
O3B PB O3A PA 211.0 300.0
N2B PB O3A O1B 115.6 120.0
N2B PB O3A O3B 246.3 240.0
O3A PB N2B HN2B 137.8 56.0
O1B PB O3A O3B 130.7 120.0
O3A PB O1B HO1B 351.6 60.0
PB O3A PA O1A 209.9 285.1
PB O3A PA O2A 339.3 45.0
PB O3A PA O5' 95.4 165.0
O1A PA O3A O2A 230.7 240.0
O1A PA O3A O5' 114.5 120.1
O3A PA O1A HO1A 357.8 299.9
O2A PA O3A O5' 243.9 240.0
O3A PA O5' C5' 102.6 185.0
O3A PA O1A O2A 117.0 119.9
O3A PA O1A O5' 242.2 240.0
O2A PA O1A O5' 125.3 120.0
O1A PA O5' C5' 349.5 65.0
O3A PA O2A O1A 242.7 240.0
O3A PA O2A O5' 118.2 120.0
O1A PA O2A O5' 235.5 239.9
O2A PA O1A HO1A 240.9 180.0
O2A PA O5' C5' 215.9 305.0
O3A PA O5' O1A 113.2 120.0
O3A PA O5' O2A 246.7 240.1
O1A PA O5' O2A 133.6 120.0
O5' PA O1A HO1A 115.6 60.0
PA O5' C5' C4' 251.3 180.0
PA O5' C5' H5' 11.4 300.1
PA O5' C5' H5'A 132.6 60.0
O5' C5' C4' C3' 54.1 185.0
O5' C5' C4' O4' 297.3 69.6
C4' C5' O5' H5' 240.0 240.0
C4' C5' O5' H5'A 118.7 120.0
O5' C5' C4' H4' 174.7 307.2
H5' C5' O5' H5'A 238.8 240.1
O5' C5' C4' H5' 120.0 120.0
O5' C5' C4' H5'A 241.3 240.0
C3' C4' C5' O4' 116.8 115.4
C5' C4' C3' O3' 140.9 98.6
C5' C4' C3' C2' 259.4 217.1
C3' C4' C5' H4' 239.4 237.8
C5' C4' C3' H3' 21.4 335.9
C5' C4' O4' C1' 119.2 159.4
O4' C4' C5' H4' 122.6 122.4
H5' C5' C4' H5'A 121.2 120.0
C5' C4' C3' O4' 241.7 241.2
C3' C4' C5' H5' 294.1 65.0
C3' C4' C5' H5'A 172.9 305.0
C5' C4' C3' H4' 119.2 122.2
C3' C4' O4' C1' 358.6 40.6
O4' C4' C3' H4' 237.5 241.0
O3' C3' C4' C2' 241.4 241.4
O3' C3' C4' H3' 119.5 122.6
C4' C3' O3' HO3' 159.4 179.9
C4' C3' C2' O2' 209.9 241.4
C4' C3' C2' C1' 333.1 0.0
C2' C3' C4' H3' 238.1 241.2
C4' C3' C2' H2' 93.2 118.8
C5' C4' O4' C3' 120.5 118.8
O4' C4' C5' H5' 177.3 309.6
O4' C4' C5' H5'A 56.1 189.7
C5' C4' O4' H4' 240.9 237.7
O4' C4' C3' O3' 259.1 217.4
O4' C4' C3' C2' 17.7 336.0
C3' C4' O4' H4' 120.4 118.9
O4' C4' C3' H3' 139.6 94.8
C2' C1' O4' C4' 344.6 319.5
C4' O4' C1' N1 218.8 200.6
C4' O4' C1' H1' 103.7 78.3
O3' C3' C4' O4' 259.1 217.4
C4' C3' O3' C2' 113.3 114.6
O3' C3' C4' H4' 21.7 336.3
C4' C3' O3' H3' 235.8 237.4
O3' C3' C2' O2' 326.3 360.0
O3' C3' C2' C1' 89.5 118.6
C2' C3' O3' H3' 122.5 122.8
O3' C3' C2' H2' 209.6 237.4
C2' C3' C4' O4' 17.7 336.0
C4' C3' C2' O3' 243.6 241.4
C2' C3' C4' H4' 140.3 94.9
C4' C3' C2' H3' 123.9 118.7
O3' C3' C2' H3' 240.3 237.3
C2' C3' O3' HO3' 46.0 65.3
O2' C2' C3' C1' 236.8 241.3
O2' C2' C3' H2' 116.7 122.6
C3' C2' O2' HO2' 127.9 298.5
C3' C2' C1' O4' 26.0 24.0
C3' C2' C1' N1 146.9 142.8
C1' C2' C3' H2' 239.9 241.2
C3' C2' C1' H1' 261.7 265.1
C3' C2' O2' C1' 119.0 114.6
O2' C2' C3' H3' 86.0 122.6
C3' C2' O2' H2' 238.9 237.4
O2' C2' C1' O4' 148.1 142.6
O2' C2' C1' N1 269.0 261.5
C1' C2' O2' H2' 119.9 122.8
O2' C2' C1' H1' 23.8 23.8
C4' O4' C1' C2' 344.6 319.5
C3' C2' C1' O2' 237.9 241.3
C1' C2' C3' H3' 209.2 241.3
C3' C2' C1' H2' 121.2 118.7
O2' C2' C1' H2' 243.3 237.3
C1' C2' O2' HO2' 8.9 183.9
O4' C1' C2' N1 239.1 241.2
O4' C1' C2' H1' 124.3 118.9
C2' C1' N1 C2 129.1 115.0
C2' C1' N1 C6 307.5 294.7
N1 C1' C2' H1' 245.2 237.7
C1' O4' C4' H4' 238.3 281.7
C2' C1' O4' N1 125.8 118.8
O4' C1' C2' H2' 264.8 265.3
C2' C1' O4' H1' 240.9 241.1
O4' C1' N1 C2 246.3 230.4
O4' C1' N1 C6 64.7 50.1
N1 C1' O4' H1' 115.0 122.3
C2' C1' N1 O4' 242.8 244.6
N1 C1' C2' H2' 25.7 24.1
C2' C1' N1 H1' 118.7 122.3
O4' C1' N1 H1' 235.9 237.7
C2 N1 C1' C6 181.6 180.2
C1' N1 C2 O2 358.4 0.0
C1' N1 C2 N3 180.5 180.0
C1' N1 C6 C5 181.3 180.0
C1' N1 C6 H6 1.3 360.0
C1' N1 C2 C6 178.4 179.8
C2 N1 C1' H1' 10.4 352.7
C2 N1 C6 C5 359.7 359.8
C2 N1 C6 H6 179.7 179.7
O2 C2 N1 N3 177.9 180.0
N1 C2 N3 C4 359.1 0.1
N1 C2 N3 HN3 179.1 180.0
C1' N1 C6 C2 181.7 180.2
C6 N1 C1' H1' 188.7 172.4
C6 N1 C2 O2 180.0 180.3
C6 N1 C2 N3 2.1 0.2
N1 C6 C5 C4 357.5 360.0
C5 C6 N1 H6 180.0 180.0
N1 C6 C5 H5 177.5 180.0
O2 C2 N1 C6 180.0 180.3
N1 C2 O2 N3 182.0 180.0
O2 C2 N3 C4 181.2 180.0
O2 C2 N3 HN3 1.1 360.0
N3 C2 N1 C6 2.1 0.2
N1 C2 N3 O2 178.0 180.0
C5 C4 N3 C2 357.9 359.7
C2 N3 C4 O4 181.2 180.0
C4 N3 C2 HN3 180.0 180.0
N1 C6 C5 H6 180.0 180.0
C6 C5 C4 N3 3.7 0.3
C6 C5 C4 O4 180.2 180.0
C4 C5 C6 H5 180.0 180.0
C2 N3 C4 C5 357.9 359.7
C4 C5 C6 H6 177.5 180.0
C6 C5 C4 H5 180.0 180.0
N3 C4 C5 O4 183.5 180.3
C5 C4 N3 HN3 177.9 179.7
C2 N3 C4 HN3 180.0 180.0
C5 C4 N3 O4 176.8 179.7
N3 C4 C5 H5 183.7 180.3
C5 C4 O4 N3 183.4 180.3
O4 C4 C5 H5 0.2 360.0
O4 C4 N3 HN3 1.2 0.1
HO3G O3G PG O1G 11.1 60.1
HO3G O3G PG N2B 117.7 300.1
HO1G O1G PG N2B 61.2 180.0
PG N2B HN2B PB 220.5 236.1
HN2B N2B PB O1B 258.0 176.1
HN2B N2B PB O3B 27.9 296.1
HN2B N2B PB O3A 137.8 56.0
HO1B O1B PB O3B 110.5 180.0
HO1B O1B PB O3A 351.6 60.0
HO1A O1A PA O2A 240.9 180.0
HO1A O1A PA O5' 115.6 60.0
O5' C5' H5' C4' 237.6 240.0
O5' C5' H5' H5'A 118.8 120.0
H5' C5' C4' C3' 294.1 65.0
H5' C5' C4' O4' 177.3 309.6
C4' C5' H5' H5'A 241.2 240.0
H5' C5' C4' H4' 54.7 187.2
O5' C5' H5'A C4' 121.6 120.0
O5' C5' H5'A H5' 240.8 240.0
H5'A C5' C4' C3' 172.9 305.0
H5'A C5' C4' O4' 56.1 189.7
C4' C5' H5'A H5' 119.2 120.0
H5'A C5' C4' H4' 293.4 67.2
C5' C4' H4' C3' 238.0 237.8
C5' C4' H4' O4' 119.8 122.3
H4' C4' C5' H5' 54.7 187.2
H4' C4' C5' H5'A 293.4 67.2
C3' C4' H4' O4' 241.7 244.5
H4' C4' C3' O3' 21.7 336.3
H4' C4' C3' C2' 140.3 94.9
H4' C4' C3' H3' 262.2 213.7
H4' C4' O4' C1' 238.3 281.7
H3' C3' C4' O4' 139.6 94.8
C4' C3' H3' O3' 120.3 122.6
C4' C3' H3' C2' 242.7 245.3
H3' C3' C4' H4' 262.2 213.7
O3' C3' H3' C2' 122.4 122.7
H3' C3' O3' HO3' 283.6 302.6
H3' C3' C2' O2' 86.0 122.6
H3' C3' C2' C1' 209.2 241.3
H3' C3' C2' H2' 329.3 0.1
HO3' O3' C3' C2' 46.0 65.3
HO3' O3' C3' H3' 283.6 302.6
C3' C2' H2' O2' 120.7 122.6
C3' C2' H2' C1' 242.5 245.3
H2' C2' C3' H3' 329.3 0.1
O2' C2' H2' C1' 121.8 122.7
H2' C2' O2' HO2' 249.0 61.1
H2' C2' C1' O4' 264.8 265.3
H2' C2' C1' N1 25.7 24.1
H2' C2' C1' H1' 140.5 146.4
HO2' O2' C2' C1' 8.9 183.9
HO2' O2' C2' H2' 249.0 61.1
C2' C1' H1' O4' 115.8 115.4
C2' C1' H1' N1 235.4 237.7
H1' C1' C2' H2' 140.5 146.4
O4' C1' H1' N1 119.6 122.3
H1' C1' N1 C2 10.4 352.7
H1' C1' N1 C6 188.7 172.4
N1 C6 H6 C5 180.0 180.0
H6 C6 C5 C4 177.5 180.0
H6 C6 C5 H5 357.5 360.0
C6 C5 H5 C4 180.0 180.0
H5 C5 C6 H6 357.5 360.0
H5 C5 C4 N3 183.7 180.3
H5 C5 C4 O4 0.2 360.0
C2 N3 HN3 C4 180.0 180.0
HN3 N3 C4 O4 1.2 0.1