PDB Chemical Component UMS

Ideal Model

Chemical Description

Name 2'-METHYLSELENYL-2'-DEOXYURIDINE-5'-PHOSPHATE
Formula C10 H15 N2 O8 P Se
Formal charge 0
Molecular weight 401.168 g/mol
Component type DNA LINKING
Nonstandard Parent Id DU

Chemical features

Atom count 37
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms OP3 HO3'
Bond count 38
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-Se-methyl-2'-selenouridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3R,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3-hydroxy-4-methylselanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) C[Se][C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2C=CC(=O)NC2=O
SMILES (CACTVS) C[Se][CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=CC(=O)NC2=O
Stereo SMILES (OpenEye) C[Se][C@@H]1[C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)COP(=O)(O)O)O
InChI descriptor InChI=1S/C10H15N2O8PSe/c1-22-8-7(14)5(4-19-21(16,17)18)20-9(8)12-3-2-6(13)11-10(12)15/h2-3,5,7-9,14H,4H2,1H3,(H,11,13,15)(H2,16,17,18)/t5-,7-,8-,9-/m1/s1
InChIKey descriptor PADIGPKUSVFCBC-ZOQUXTDFSA-N

Status Information

Last modified 2011-06-04
Created 2002-08-15
Release status REL
Model PDB code 1MA8
Processing site RCSB