PDB Chemical Component UMS

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for UMS

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP3 P   1.610
OP3 HOP3   0.967
P OP1 1.488 1.480
P OP2 1.446 1.610
P O5' 1.600 1.611
OP2 HOP2 0.950 0.966
O5' C5' 1.539 1.429
C5' C4' 1.435 1.530
C5' H5' 1.100 1.090
C5' H5'2 1.100 1.090
C4' O4' 1.510 1.444
C4' C3' 1.533 1.550
C4' H4' 1.100 1.090
O4' C1' 1.422 1.437
C3' O3' 1.417 1.429
C3' C2' 1.510 1.549
C3' H3' 1.100 1.089
O3' HO3' 0.950 0.967
C2' SE2' 2.005 1.960
C2' C1' 1.504 1.541
C2' H2' 1.100 1.090
SE2' CA' 2.028 1.960
C1' N1 1.509 1.466
C1' H1' 1.100 1.089
CA' HA' 1.100 1.091
CA' HA'2 1.100 1.089
CA' HA'3 1.100 1.090
N1 C2 1.356 1.345
N1 C6 1.382 1.367
C2 O2 1.211 1.216
C2 N3 1.377 1.346
N3 C4 1.347 1.349
N3 H3 1.000 0.970
C4 O4 1.241 1.218
C4 C5 1.442 1.416
C5 C6 1.371 1.350
C5 H5 1.080 1.080
C6 H6 1.080 1.080

Bond Angles for UMS

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P OP3 HOP3   114.0
OP3 P OP1   109.5
OP3 P OP2   109.5
OP3 P O5'   109.5
OP1 P OP2 117.4 109.5
OP1 P O5' 110.9 109.4
OP2 P O5' 109.4 109.5
P OP2 HOP2 109.5 114.0
P O5' C5' 119.5 123.0
O5' C5' C4' 105.1 109.5
O5' C5' H5' 111.0 109.5
O5' C5' H5'2 111.9 109.5
C4' C5' H5' 110.9 109.5
C4' C5' H5'2 111.9 109.4
C5' C4' O4' 108.9 110.6
C5' C4' C3' 121.4 110.6
C5' C4' H4' 98.6 110.6
H5' C5' H5'2 106.2 109.5
O4' C4' C3' 97.0 103.5
O4' C4' H4' 122.4 110.6
C4' O4' C1' 108.6 107.0
C3' C4' H4' 110.2 110.8
C4' C3' O3' 109.7 110.9
C4' C3' C2' 107.3 102.1
C4' C3' H3' 111.5 110.9
O4' C1' C2' 111.4 107.3
O4' C1' N1 105.9 109.8
O4' C1' H1' 111.7 109.9
O3' C3' C2' 111.6 110.9
O3' C3' H3' 107.2 110.8
C3' O3' HO3' 109.5 114.1
C2' C3' H3' 109.6 110.9
C3' C2' SE2' 107.9 110.5
C3' C2' C1' 96.6 104.1
C3' C2' H2' 117.4 110.5
SE2' C2' C1' 106.7 110.5
SE2' C2' H2' 108.8 110.5
C2' SE2' CA' 93.8 101.0
C1' C2' H2' 118.4 110.6
C2' C1' N1 112.6 109.8
C2' C1' H1' 104.9 109.9
SE2' CA' HA' 109.5 109.5
SE2' CA' HA'2 109.4 109.5
SE2' CA' HA'3 109.5 109.5
N1 C1' H1' 110.5 110.0
C1' N1 C2 117.0 119.6
C1' N1 C6 119.5 119.7
HA' CA' HA'2 109.5 109.4
HA' CA' HA'3 109.4 109.4
HA'2 CA' HA'3 109.5 109.5
C2 N1 C6 123.5 120.6
N1 C2 O2 124.3 119.6
N1 C2 N3 111.8 120.9
N1 C6 C5 120.8 119.7
N1 C6 H6 119.6 120.2
O2 C2 N3 123.8 119.5
C2 N3 C4 131.7 120.3
C2 N3 H3 114.2 119.9
C4 N3 H3 114.2 119.9
N3 C4 O4 122.0 120.3
N3 C4 C5 112.6 119.4
O4 C4 C5 125.4 120.3
C4 C5 C6 119.5 119.1
C4 C5 H5 120.3 120.4
C6 C5 H5 120.3 120.5
C5 C6 H6 119.6 120.2

Torsion Angles for UMS

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP3 OP2   240.0
OP1 P OP3 O5'   120.0
OP2 P OP3 O5'   240.0
OP3 P OP2 HOP2   300.0
OP3 P O5' C5'   65.0
HOP3 OP3 P OP1   180.0
HOP3 OP3 P OP2   300.0
HOP3 OP3 P O5'   60.0
OP1 P OP3 HOP3   180.0
OP3 P OP1 OP2   120.0
OP3 P OP1 O5'   240.0
OP2 P OP1 O5' 233.2 119.9
OP1 P OP2 HOP2 98.9 60.0
OP1 P O5' C5' 49.7 304.9
OP2 P OP3 HOP3   300.0
OP3 P OP2 OP1   240.0
OP3 P OP2 O5'   120.0
OP1 P OP2 O5' 127.5 240.1
OP2 P O5' C5' 180.7 185.0
O5' P OP3 HOP3   60.0
OP3 P O5' OP1   120.0
OP3 P O5' OP2   240.0
OP1 P O5' OP2 229.0 119.9
O5' P OP2 HOP2 331.4 180.0
P O5' C5' C4' 174.4 180.0
P O5' C5' H5' 294.4 300.0
P O5' C5' H5'2 52.8 60.1
HOP2 OP2 P O5' 331.4 180.0
C4' C5' O5' H5' 240.0 240.0
C4' C5' O5' H5'2 121.6 120.0
O5' C5' C4' O4' 293.6 66.5
O5' C5' C4' C3' 44.8 180.5
O5' C5' C4' H4' 164.9 303.6
H5' C5' O5' H5'2 241.6 240.0
O5' C5' C4' H5' 120.0 120.0
O5' C5' C4' H5'2 238.4 240.0
H5' C5' C4' H5'2 118.4 120.0
O4' C4' C5' C3' 248.8 246.0
O4' C4' C5' H4' 128.7 122.9
C5' C4' O4' C1' 152.6 158.6
C3' C4' C5' H4' 239.9 236.9
C5' C4' C3' O3' 78.7 86.3
C5' C4' C3' C2' 200.1 204.5
C5' C4' C3' H3' 320.1 322.7
O5' C5' H5' C4' 243.6 240.0
O5' C5' H5' H5'2 121.8 120.0
C4' C5' H5' H5'2 238.2 240.0
H5' C5' C4' O4' 173.6 306.5
H5' C5' C4' C3' 284.8 60.5
H5' C5' C4' H4' 44.9 183.6
O5' C5' H5'2 C4' 117.6 120.0
O5' C5' H5'2 H5' 238.8 240.0
C4' C5' H5'2 H5' 121.2 120.0
H5'2 C5' C4' O4' 55.3 186.5
H5'2 C5' C4' C3' 166.4 300.5
H5'2 C5' C4' H4' 286.6 63.6
O4' C4' C5' H5' 173.6 306.5
O4' C4' C5' H5'2 55.3 186.5
C5' C4' O4' C3' 126.7 118.5
C5' C4' O4' H4' 246.1 237.1
C3' C4' O4' H4' 119.4 118.7
O4' C4' C3' O3' 196.0 204.8
O4' C4' C3' C2' 317.4 323.0
O4' C4' C3' H3' 77.4 81.2
C4' O4' C1' C2' 358.4 333.4
C4' O4' C1' N1 235.8 214.1
C4' O4' C1' H1' 115.4 92.9
C3' C4' C5' H5' 284.8 60.5
C3' C4' C5' H5'2 166.4 300.5
C5' C4' C3' O4' 242.7 241.5
C5' C4' C3' H4' 114.4 123.0
O4' C4' C3' H4' 231.6 241.5
C3' C4' O4' C1' 25.9 40.1
O3' C3' C4' C2' 238.6 241.8
O3' C3' C4' H3' 118.6 123.6
C4' C3' O3' HO3' 300.3 298.5
C2' C3' C4' H3' 240.0 241.7
C4' C3' C2' SE2' 291.4 262.2
C4' C3' C2' C1' 41.3 20.9
C4' C3' C2' H2' 168.1 139.7
H4' C4' C5' H5' 44.9 183.6
H4' C4' C5' H5'2 286.6 63.6
C5' C4' H4' O4' 119.0 122.9
C5' C4' H4' C3' 231.9 237.0
O4' C4' H4' C3' 112.9 114.1
H4' C4' O4' C1' 266.5 281.4
H4' C4' C3' O3' 324.4 323.3
H4' C4' C3' C2' 85.8 81.5
H4' C4' C3' H3' 205.8 199.8
C1' O4' C4' C3' 25.9 40.1
C1' O4' C4' H4' 266.5 281.4
C3' C2' C1' O4' 336.1 2.1
SE2' C2' C1' O4' 87.0 120.7
O4' C1' C2' H2' 210.0 243.3
C2' C1' O4' N1 122.7 119.4
C2' C1' O4' H1' 243.0 240.5
N1 C1' O4' H1' 120.4 121.2
O4' C1' N1 C2 208.4 233.5
O4' C1' N1 C6 27.0 53.3
O3' C3' C4' H4' 324.4 323.3
C4' C3' O3' C2' 118.8 112.7
C4' C3' O3' H3' 238.8 236.4
C2' C3' O3' H3' 120.0 123.7
O3' C3' C2' SE2' 51.6 20.4
O3' C3' C2' C1' 161.5 139.0
O3' C3' C2' H2' 288.3 257.9
C2' C3' C4' H4' 85.8 81.5
C4' C3' C2' O3' 239.8 241.8
C4' C3' C2' H3' 121.2 118.3
O4' C1' C2' C3' 336.1 2.1
O3' C3' C2' H3' 241.4 236.4
C2' C3' O3' HO3' 181.5 185.8
SE2' C2' C3' C1' 250.1 241.4
SE2' C2' C3' H2' 123.3 122.5
C3' C2' SE2' CA' 188.2 298.5
C1' C2' C3' H2' 233.2 241.2
C3' C2' C1' N1 94.8 121.4
C3' C2' C1' H1' 215.0 242.6
H3' C3' C4' H4' 205.8 199.8
C4' C3' H3' O3' 120.1 123.6
C4' C3' H3' C2' 241.3 247.2
O3' C3' H3' C2' 121.3 123.6
H3' C3' O3' HO3' 61.5 62.2
H3' C3' C2' SE2' 170.2 144.0
H3' C3' C2' C1' 280.1 262.6
H3' C3' C2' H2' 46.9 21.5
HO3' O3' C3' C2' 181.5 185.8
HO3' O3' C3' H3' 61.5 62.2
O4' C1' C2' SE2' 87.0 120.7
SE2' C2' C3' H3' 170.2 144.0
C3' C2' SE2' C1' 102.9 114.7
C3' C2' SE2' H2' 231.7 237.5
C1' C2' SE2' H2' 128.8 122.8
SE2' C2' C1' N1 205.7 240.1
SE2' C2' C1' H1' 325.9 1.2
C2' SE2' CA' HA' 114.2 300.0
C2' SE2' CA' HA'2 234.2 60.0
C2' SE2' CA' HA'3 354.2 180.1
O4' C1' C2' N1 241.3 240.6
O4' C1' C2' H1' 121.1 119.5
C1' C2' C3' H3' 280.1 262.6
C3' C2' C1' SE2' 249.1 241.4
C3' C2' C1' H2' 126.1 118.7
SE2' C2' C1' H2' 237.0 237.3
C1' C2' SE2' CA' 85.3 183.8
N1 C1' C2' H1' 239.8 238.9
C2' C1' N1 C2 86.5 115.7
C2' C1' N1 C6 265.1 295.5
H2' C2' C3' H3' 46.9 21.5
C3' C2' H2' SE2' 122.8 122.5
C3' C2' H2' C1' 244.7 245.2
SE2' C2' H2' C1' 121.9 122.7
H2' C2' SE2' CA' 316.6 61.1
H2' C2' C1' N1 328.7 2.7
H2' C2' C1' H1' 88.9 123.8
CA' SE2' C2' C1' 85.3 183.8
CA' SE2' C2' H2' 316.6 61.1
HA' CA' SE2' HA'2 240.0 240.0
HA' CA' SE2' HA'3 120.0 120.0
HA'2 CA' SE2' HA'3 240.0 239.9
O4' C1' N1 C2' 121.9 117.8
O4' C1' N1 H1' 238.8 238.8
N1 C1' C2' H2' 328.7 2.7
C2' C1' N1 H1' 116.9 121.0
C2 N1 C1' C6 181.4 180.2
C1' N1 C2 O2 359.3 0.1
C1' N1 C2 N3 177.5 180.0
C1' N1 C6 C5 180.9 179.8
C1' N1 C6 H6 0.9 359.9
O4' C1' H1' C2' 239.2 242.1
O4' C1' H1' N1 117.6 121.1
H1' C1' C2' H2' 88.9 123.8
C2' C1' H1' N1 238.4 239.0
H1' C1' N1 C2 329.6 354.6
H1' C1' N1 C6 148.2 174.4
SE2' CA' HA' HA'2 120.0 120.0
SE2' CA' HA' HA'3 240.0 240.0
HA'2 CA' HA' HA'3 120.0 120.0
SE2' CA' HA'2 HA' 240.0 240.0
SE2' CA' HA'2 HA'3 120.0 120.1
HA' CA' HA'2 HA'3 240.0 240.1
SE2' CA' HA'3 HA' 120.0 120.0
SE2' CA' HA'3 HA'2 240.0 239.9
HA' CA' HA'3 HA'2 120.0 119.9
C2 N1 C1' H1' 329.6 354.6
C1' N1 C2 C6 178.6 179.8
C2 N1 C6 C5 359.4 359.5
C2 N1 C6 H6 179.4 179.7
O2 C2 N1 N3 181.7 180.1
N1 C2 N3 C4 2.5 0.1
N1 C2 N3 H3 182.5 180.0
C6 N1 C1' H1' 148.2 174.4
C1' N1 C6 C2 181.5 180.2
C6 N1 C2 O2 180.7 180.3
C6 N1 C2 N3 359.0 0.2
C4 C5 C6 N1 1.2 0.5
N1 C6 C5 H5 181.2 180.3
C5 C6 N1 H6 180.0 179.8
O2 C2 N1 C6 180.7 180.3
N1 C2 O2 N3 178.1 179.9
O2 C2 N3 C4 180.8 180.0
O2 C2 N3 H3 0.8 359.9
N3 C2 N1 C6 359.0 0.2
N1 C2 N3 O2 181.7 180.1
C4 N3 C2 H3 180.0 180.1
C2 N3 C4 O4 177.3 180.0
C2 N3 C4 C5 358.0 359.9
C2 N3 C4 H3 180.0 179.9
O4 C4 N3 C5 179.3 180.1
N3 C4 C5 C6 359.9 359.8
N3 C4 C5 H5 179.9 180.0
C2 N3 H3 C4 180.0 180.1
H3 N3 C4 O4 357.3 0.1
H3 N3 C4 C5 178.0 180.0
O4 C4 N3 H3 357.3 0.1
N3 C4 O4 C5 180.8 179.9
O4 C4 C5 C6 180.7 179.7
O4 C4 C5 H5 0.7 359.9
N1 C6 C5 C4 1.2 0.5
C5 C4 N3 H3 178.0 180.0
N3 C4 C5 O4 179.3 180.1
C6 C5 C4 H5 180.0 179.8
C4 C5 C6 H6 181.2 180.3
N1 C6 C5 H6 180.0 180.2
C4 C5 C6 H5 180.0 180.2
C4 C5 H5 C6 180.0 179.8
H5 C5 C6 H6 1.2 0.1
N1 C6 H6 C5 180.0 179.8
H6 C6 C5 H5 1.2 0.1