PDB Chemical Component UA3

Ideal Model

Chemical Description

Name URACIL ARABINOSE-3'-PHOSPHATE
Synonyms 1-(3-O-PHOSPHONO-BETA-L-ARABINOFURANOSYL)PYRIMIDINE-2,4(1H,3H)-DIONE
Formula C9 H13 N2 O9 P
Formal charge 0
Molecular weight 324.181 g/mol
Component type NON-POLYMER

Chemical features

Atom count 34
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Bond count 35
Aromatic bond count 6

Chemical Identifiers

Systematic name (ACDLabs) 1-(3-O-phosphono-beta-D-arabinofuranosyl)pyrimidine-2,4(1H,3H)-dione
Systematic name (OpenEye OEToolkits) [(3S,4S,5R)-5-(2,4-dioxopyrimidin-1-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) OC[C@H]1O[C@H]([C@@H](O)[C@@H]1O[P](O)(O)=O)N2C=CC(=O)NC2=O
SMILES (CACTVS) OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)N2C=CC(=O)NC2=O
Stereo SMILES (OpenEye) C1=CN(C(=O)NC1=O)[C@H]2[C@H]([C@@H](C(O2)CO)OP(=O)(O)O)O
InChI descriptor InChI=1S/C9H13N2O9P/c12-3-4-7(20-21(16,17)18)6(14)8(19-4)11-2-1-5(13)10-9(11)15/h1-2,4,6-8,12,14H,3H2,(H,10,13,15)(H2,16,17,18)/t4-,6+,7-,8-/m1/s1
InChIKey descriptor FOGRQMPFHUHIGU-PXBUCIJWSA-N

Status Information

Last modified 2011-06-04
Created 2004-07-27
Release status REL
Model PDB code 1W4O
Processing site RCSB