PDB Chemical Component UA3
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for UA3
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.426 |
1.346 |
| N1 |
C6 |
1.428 |
1.367 |
| N1 |
C1' |
1.404 |
1.466 |
| C2 |
O2 |
1.179 |
1.216 |
| C2 |
N3 |
1.402 |
1.347 |
| N3 |
C4 |
1.413 |
1.348 |
| N3 |
H3 |
1.020 |
0.970 |
| C4 |
O4 |
1.211 |
1.218 |
| C4 |
C5 |
1.454 |
1.416 |
| C5 |
C6 |
1.345 |
1.350 |
| C5 |
H5 |
1.103 |
1.080 |
| C6 |
H6 |
1.103 |
1.080 |
| O5' |
C5' |
1.571 |
1.428 |
| O5' |
H5' |
0.950 |
0.966 |
| C5' |
C4' |
1.336 |
1.529 |
| C5' |
H51 |
1.115 |
1.090 |
| C5' |
H52 |
1.115 |
1.090 |
| C4' |
O4' |
1.424 |
1.437 |
| C4' |
C3' |
1.376 |
1.541 |
| C4' |
H4 |
1.115 |
1.090 |
| O4' |
C1' |
1.560 |
1.444 |
| C3' |
O3' |
1.540 |
1.428 |
| C3' |
C2' |
1.745 |
1.551 |
| C3' |
H3' |
1.115 |
1.090 |
| O3' |
P |
1.507 |
1.610 |
| C2' |
O2' |
1.643 |
1.428 |
| C2' |
C1' |
1.686 |
1.549 |
| C2' |
H2' |
1.115 |
1.090 |
| O2' |
HB |
0.950 |
0.967 |
| C1' |
H1' |
1.115 |
1.089 |
| O3P |
P |
1.603 |
1.609 |
| O3P |
H3P |
0.950 |
0.967 |
| P |
O1P |
1.500 |
1.480 |
| P |
O2P |
1.505 |
1.609 |
| O2P |
H2P |
0.950 |
0.967 |
Bond Angles for UA3
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
121.4 |
120.6 |
| C2 |
N1 |
C1' |
116.3 |
119.6 |
| N1 |
C2 |
O2 |
122.2 |
119.6 |
| N1 |
C2 |
N3 |
113.2 |
120.9 |
| C6 |
N1 |
C1' |
122.3 |
119.7 |
| N1 |
C6 |
C5 |
122.5 |
119.7 |
| N1 |
C6 |
H6 |
118.8 |
120.1 |
| N1 |
C1' |
O4' |
114.8 |
110.6 |
| N1 |
C1' |
C2' |
102.1 |
110.7 |
| N1 |
C1' |
H1' |
113.5 |
110.6 |
| O2 |
C2 |
N3 |
124.6 |
119.6 |
| C2 |
N3 |
C4 |
128.0 |
120.3 |
| C2 |
N3 |
H3 |
116.0 |
119.9 |
| C4 |
N3 |
H3 |
116.0 |
119.9 |
| N3 |
C4 |
O4 |
118.1 |
120.3 |
| N3 |
C4 |
C5 |
114.9 |
119.4 |
| O4 |
C4 |
C5 |
127.0 |
120.3 |
| C4 |
C5 |
C6 |
120.0 |
119.1 |
| C4 |
C5 |
H5 |
120.0 |
120.4 |
| C6 |
C5 |
H5 |
120.0 |
120.4 |
| C5 |
C6 |
H6 |
118.8 |
120.2 |
| C5' |
O5' |
H5' |
117.7 |
106.9 |
| O5' |
C5' |
C4' |
117.7 |
109.5 |
| O5' |
C5' |
H51 |
109.3 |
109.5 |
| O5' |
C5' |
H52 |
109.2 |
109.4 |
| C4' |
C5' |
H51 |
109.2 |
109.5 |
| C4' |
C5' |
H52 |
109.2 |
109.5 |
| C5' |
C4' |
O4' |
113.3 |
109.9 |
| C5' |
C4' |
C3' |
115.4 |
110.0 |
| C5' |
C4' |
H4 |
132.2 |
109.9 |
| H51 |
C5' |
H52 |
100.9 |
109.5 |
| O4' |
C4' |
C3' |
129.9 |
107.5 |
| O4' |
C4' |
H4 |
82.0 |
109.8 |
| C4' |
O4' |
C1' |
96.7 |
106.9 |
| C3' |
C4' |
H4 |
74.3 |
109.8 |
| C4' |
C3' |
O3' |
133.7 |
110.8 |
| C4' |
C3' |
C2' |
91.1 |
104.0 |
| C4' |
C3' |
H3' |
106.3 |
110.4 |
| O4' |
C1' |
C2' |
97.9 |
103.5 |
| O4' |
C1' |
H1' |
113.5 |
110.6 |
| O3' |
C3' |
C2' |
110.0 |
110.6 |
| O3' |
C3' |
H3' |
106.3 |
110.4 |
| C3' |
O3' |
P |
131.3 |
106.9 |
| C2' |
C3' |
H3' |
106.3 |
110.5 |
| C3' |
C2' |
O2' |
109.6 |
111.0 |
| C3' |
C2' |
C1' |
96.5 |
102.1 |
| C3' |
C2' |
H2' |
107.6 |
110.8 |
| O3' |
P |
O3P |
105.5 |
109.5 |
| O3' |
P |
O1P |
109.0 |
109.5 |
| O3' |
P |
O2P |
109.2 |
109.4 |
| O2' |
C2' |
C1' |
126.4 |
111.0 |
| O2' |
C2' |
H2' |
107.6 |
110.9 |
| C2' |
O2' |
HB |
126.4 |
106.8 |
| C1' |
C2' |
H2' |
107.6 |
110.9 |
| C2' |
C1' |
H1' |
113.5 |
110.7 |
| P |
O3P |
H3P |
105.5 |
106.8 |
| O3P |
P |
O1P |
113.3 |
109.5 |
| O3P |
P |
O2P |
108.7 |
109.5 |
| O1P |
P |
O2P |
111.0 |
109.5 |
| P |
O2P |
H2P |
109.1 |
106.8 |
Torsion Angles for UA3
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
N1 |
C2 |
C1' |
178.6 |
179.7 |
| C2 |
N1 |
C6 |
C5 |
0.4 |
0.2 |
| C2 |
N1 |
C6 |
H6 |
180.3 |
180.2 |
| C2 |
N1 |
C1' |
O4' |
203.8 |
201.4 |
| C2 |
N1 |
C1' |
C2' |
99.0 |
87.2 |
| C2 |
N1 |
C1' |
H1' |
336.5 |
324.2 |
| O2 |
C2 |
N1 |
N3 |
180.2 |
180.5 |
| N1 |
C2 |
N3 |
C4 |
0.3 |
0.4 |
| N1 |
C2 |
N3 |
H3 |
180.3 |
180.3 |
| C2 |
N1 |
C6 |
C1' |
181.5 |
180.3 |
| C6 |
N1 |
C2 |
O2 |
179.7 |
180.0 |
| C6 |
N1 |
C2 |
N3 |
359.5 |
359.5 |
| C6 |
N1 |
C1' |
O4' |
25.2 |
21.6 |
| C6 |
N1 |
C1' |
C2' |
280.4 |
267.5 |
| C6 |
N1 |
C1' |
H1' |
157.9 |
144.5 |
| C4 |
C5 |
C6 |
N1 |
0.0 |
0.0 |
| N1 |
C6 |
C5 |
H5 |
180.0 |
179.9 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
180.0 |
| C2 |
N1 |
C1' |
C6 |
178.6 |
179.7 |
| C1' |
N1 |
C2 |
O2 |
1.1 |
0.3 |
| C1' |
N1 |
C2 |
N3 |
180.9 |
179.8 |
| C1' |
N1 |
C6 |
C5 |
178.9 |
180.0 |
| C1' |
N1 |
C6 |
H6 |
358.9 |
360.0 |
| C4' |
O4' |
C1' |
N1 |
212.3 |
201.3 |
| O4' |
C1' |
N1 |
C2' |
104.7 |
114.1 |
| O4' |
C1' |
N1 |
H1' |
227.2 |
237.2 |
| C3' |
C2' |
C1' |
N1 |
168.7 |
155.7 |
| O2' |
C2' |
C1' |
N1 |
48.5 |
37.4 |
| N1 |
C1' |
C2' |
H2' |
279.5 |
273.7 |
| C2' |
C1' |
N1 |
H1' |
122.5 |
123.0 |
| O2 |
C2 |
N1 |
C6 |
179.7 |
180.0 |
| O2 |
C2 |
N1 |
C1' |
1.1 |
0.3 |
| N1 |
C2 |
O2 |
N3 |
179.8 |
179.5 |
| O2 |
C2 |
N3 |
C4 |
180.1 |
179.9 |
| O2 |
C2 |
N3 |
H3 |
0.1 |
359.9 |
| N3 |
C2 |
N1 |
C6 |
359.5 |
359.5 |
| N3 |
C2 |
N1 |
C1' |
180.9 |
179.8 |
| N1 |
C2 |
N3 |
O2 |
180.2 |
180.5 |
| C4 |
N3 |
C2 |
H3 |
180.0 |
180.1 |
| C2 |
N3 |
C4 |
O4 |
179.9 |
179.7 |
| C2 |
N3 |
C4 |
C5 |
0.0 |
359.9 |
| C2 |
N3 |
C4 |
H3 |
180.0 |
179.9 |
| O4 |
C4 |
N3 |
C5 |
179.9 |
179.8 |
| N3 |
C4 |
C5 |
C6 |
359.8 |
359.9 |
| N3 |
C4 |
C5 |
H5 |
179.8 |
180.0 |
| C2 |
N3 |
H3 |
C4 |
180.0 |
180.1 |
| H3 |
N3 |
C4 |
O4 |
359.9 |
359.8 |
| H3 |
N3 |
C4 |
C5 |
180.0 |
180.0 |
| O4 |
C4 |
N3 |
H3 |
359.9 |
359.8 |
| N3 |
C4 |
O4 |
C5 |
180.1 |
180.2 |
| O4 |
C4 |
C5 |
C6 |
179.9 |
180.0 |
| O4 |
C4 |
C5 |
H5 |
359.9 |
0.1 |
| N1 |
C6 |
C5 |
C4 |
0.0 |
0.0 |
| C5 |
C4 |
N3 |
H3 |
180.0 |
180.0 |
| N3 |
C4 |
C5 |
O4 |
179.9 |
179.8 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
179.9 |
| C4 |
C5 |
C6 |
H6 |
180.0 |
180.1 |
| C5 |
C6 |
N1 |
C1' |
178.9 |
180.0 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.1 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
179.9 |
| H5 |
C5 |
C6 |
H6 |
0.0 |
360.0 |
| H6 |
C6 |
N1 |
C1' |
358.9 |
360.0 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
H5 |
0.0 |
360.0 |
| C4' |
C5' |
O5' |
H51 |
234.7 |
240.0 |
| C4' |
C5' |
O5' |
H52 |
125.2 |
120.0 |
| O5' |
C5' |
C4' |
O4' |
262.9 |
61.7 |
| O5' |
C5' |
C4' |
C3' |
70.8 |
179.7 |
| O5' |
C5' |
C4' |
H4 |
162.2 |
300.7 |
| H51 |
C5' |
O5' |
H52 |
250.5 |
240.0 |
| H5' |
O5' |
C5' |
C4' |
180.0 |
180.0 |
| H5' |
O5' |
C5' |
H51 |
305.2 |
300.0 |
| H5' |
O5' |
C5' |
H52 |
54.8 |
60.0 |
| C4' |
C5' |
O5' |
H5' |
180.0 |
180.0 |
| O5' |
C5' |
C4' |
H51 |
125.3 |
120.0 |
| O5' |
C5' |
C4' |
H52 |
234.8 |
240.0 |
| H51 |
C5' |
C4' |
H52 |
109.5 |
120.0 |
| O4' |
C4' |
C5' |
C3' |
192.1 |
241.9 |
| O4' |
C4' |
C5' |
H4 |
100.7 |
120.9 |
| C5' |
C4' |
O4' |
C1' |
181.0 |
146.0 |
| C3' |
C4' |
C5' |
H4 |
268.5 |
239.0 |
| C5' |
C4' |
C3' |
O3' |
93.0 |
119.8 |
| C5' |
C4' |
C3' |
C2' |
212.4 |
238.6 |
| C5' |
C4' |
C3' |
H3' |
319.8 |
357.1 |
| H51 |
C5' |
O5' |
H5' |
305.2 |
300.0 |
| O5' |
C5' |
H51 |
C4' |
229.9 |
239.9 |
| O5' |
C5' |
H51 |
H52 |
115.0 |
120.0 |
| C4' |
C5' |
H51 |
H52 |
245.1 |
240.0 |
| H51 |
C5' |
C4' |
O4' |
137.6 |
301.6 |
| H51 |
C5' |
C4' |
C3' |
305.5 |
59.7 |
| H51 |
C5' |
C4' |
H4 |
37.0 |
180.7 |
| H52 |
C5' |
O5' |
H5' |
54.8 |
60.0 |
| O5' |
C5' |
H52 |
C4' |
130.0 |
120.1 |
| O5' |
C5' |
H52 |
H51 |
245.0 |
240.0 |
| C4' |
C5' |
H52 |
H51 |
114.9 |
120.0 |
| H52 |
C5' |
C4' |
O4' |
28.1 |
181.7 |
| H52 |
C5' |
C4' |
C3' |
196.0 |
299.7 |
| H52 |
C5' |
C4' |
H4 |
287.5 |
60.7 |
| N1 |
C1' |
O4' |
C4' |
212.3 |
201.3 |
| O4' |
C4' |
C5' |
H51 |
137.6 |
301.6 |
| O4' |
C4' |
C5' |
H52 |
28.1 |
181.7 |
| C5' |
C4' |
O4' |
C3' |
165.7 |
119.6 |
| C5' |
C4' |
O4' |
H4 |
227.3 |
239.1 |
| C3' |
C4' |
O4' |
H4 |
61.7 |
119.4 |
| O4' |
C4' |
C3' |
O3' |
258.4 |
239.3 |
| O4' |
C4' |
C3' |
C2' |
17.8 |
358.2 |
| O4' |
C4' |
C3' |
H3' |
125.2 |
116.7 |
| C4' |
O4' |
C1' |
C2' |
319.6 |
319.9 |
| C4' |
O4' |
C1' |
H1' |
79.5 |
78.5 |
| C3' |
C4' |
C5' |
H51 |
305.5 |
59.7 |
| C3' |
C4' |
C5' |
H52 |
196.0 |
299.7 |
| C5' |
C4' |
C3' |
O4' |
194.6 |
240.5 |
| C5' |
C4' |
C3' |
H4 |
129.7 |
121.0 |
| O4' |
C4' |
C3' |
H4 |
295.1 |
240.5 |
| C3' |
C4' |
O4' |
C1' |
15.3 |
26.4 |
| O3' |
C3' |
C4' |
C2' |
240.6 |
241.2 |
| O3' |
C3' |
C4' |
H3' |
133.2 |
122.6 |
| C4' |
C3' |
O3' |
P |
201.5 |
234.8 |
| C2' |
C3' |
C4' |
H3' |
252.6 |
241.5 |
| C4' |
C3' |
C2' |
O2' |
93.1 |
97.2 |
| C4' |
C3' |
C2' |
C1' |
320.7 |
338.9 |
| C4' |
C3' |
C2' |
H2' |
209.9 |
220.8 |
| H4 |
C4' |
C5' |
H51 |
37.0 |
180.7 |
| H4 |
C4' |
C5' |
H52 |
287.5 |
60.7 |
| C5' |
C4' |
H4 |
O4' |
114.3 |
120.9 |
| C5' |
C4' |
H4 |
C3' |
249.7 |
238.9 |
| O4' |
C4' |
H4 |
C3' |
135.4 |
118.0 |
| H4 |
C4' |
O4' |
C1' |
313.7 |
266.9 |
| H4 |
C4' |
C3' |
O3' |
323.3 |
358.8 |
| H4 |
C4' |
C3' |
C2' |
82.7 |
117.6 |
| H4 |
C4' |
C3' |
H3' |
190.1 |
236.1 |
| N1 |
C1' |
O4' |
C2' |
252.7 |
241.4 |
| N1 |
C1' |
O4' |
H1' |
132.8 |
122.8 |
| C1' |
O4' |
C4' |
C3' |
15.3 |
26.4 |
| C1' |
O4' |
C4' |
H4 |
313.7 |
266.9 |
| C3' |
C2' |
C1' |
O4' |
51.1 |
37.2 |
| O2' |
C2' |
C1' |
O4' |
290.9 |
278.9 |
| O4' |
C1' |
C2' |
H2' |
161.9 |
155.2 |
| C2' |
C1' |
O4' |
H1' |
240.1 |
241.4 |
| O3' |
C3' |
C4' |
H4 |
323.3 |
358.8 |
| C4' |
C3' |
O3' |
C2' |
112.1 |
114.8 |
| C4' |
C3' |
O3' |
H3' |
226.8 |
237.4 |
| C2' |
C3' |
O3' |
H3' |
114.7 |
122.6 |
| O3' |
C3' |
C2' |
O2' |
231.0 |
216.2 |
| O3' |
C3' |
C2' |
C1' |
98.6 |
97.9 |
| O3' |
C3' |
C2' |
H2' |
347.8 |
339.8 |
| C3' |
O3' |
P |
O3P |
266.0 |
180.0 |
| C3' |
O3' |
P |
O1P |
144.0 |
60.0 |
| C3' |
O3' |
P |
O2P |
22.6 |
300.1 |
| N1 |
C1' |
C2' |
C3' |
168.7 |
155.7 |
| C2' |
C3' |
C4' |
H4 |
82.7 |
117.6 |
| C4' |
C3' |
C2' |
O3' |
222.1 |
241.0 |
| C4' |
C3' |
C2' |
H3' |
107.4 |
118.5 |
| O4' |
C1' |
C2' |
C3' |
51.1 |
37.2 |
| O3' |
C3' |
C2' |
H3' |
245.3 |
237.5 |
| C2' |
C3' |
O3' |
P |
89.4 |
120.0 |
| O2' |
C2' |
C3' |
C1' |
132.4 |
118.3 |
| O2' |
C2' |
C3' |
H2' |
243.2 |
236.4 |
| C3' |
C2' |
O2' |
HB |
65.7 |
180.9 |
| C1' |
C2' |
C3' |
H2' |
110.8 |
118.1 |
| C3' |
C2' |
C1' |
H1' |
291.2 |
278.7 |
| H3' |
C3' |
C4' |
H4 |
190.1 |
236.1 |
| C4' |
C3' |
H3' |
O3' |
146.7 |
122.9 |
| C4' |
C3' |
H3' |
C2' |
263.9 |
245.5 |
| O3' |
C3' |
H3' |
C2' |
117.2 |
122.6 |
| H3' |
C3' |
O3' |
P |
334.7 |
357.4 |
| H3' |
C3' |
C2' |
O2' |
345.7 |
338.7 |
| H3' |
C3' |
C2' |
C1' |
213.3 |
220.5 |
| H3' |
C3' |
C2' |
H2' |
102.5 |
102.4 |
| P |
O3' |
C3' |
C2' |
89.4 |
120.0 |
| P |
O3' |
C3' |
H3' |
334.7 |
357.4 |
| O3' |
P |
O3P |
H3P |
180.0 |
180.0 |
| O3P |
P |
O3' |
O1P |
122.0 |
120.0 |
| O3P |
P |
O3' |
O2P |
243.4 |
240.0 |
| O1P |
P |
O3' |
O2P |
121.4 |
120.0 |
| O3' |
P |
O2P |
H2P |
180.0 |
299.9 |
| N1 |
C1' |
C2' |
O2' |
48.5 |
37.4 |
| O4' |
C1' |
C2' |
O2' |
290.9 |
278.9 |
| O2' |
C2' |
C3' |
H3' |
345.7 |
338.7 |
| C3' |
C2' |
O2' |
C1' |
245.7 |
247.2 |
| C3' |
C2' |
O2' |
H2' |
116.7 |
123.6 |
| C1' |
C2' |
O2' |
H2' |
231.0 |
236.3 |
| O2' |
C2' |
C1' |
H1' |
171.0 |
160.4 |
| N1 |
C1' |
C2' |
O4' |
117.6 |
118.5 |
| N1 |
C1' |
C2' |
H1' |
237.5 |
237.0 |
| O4' |
C1' |
C2' |
H1' |
119.9 |
118.5 |
| C1' |
C2' |
C3' |
H3' |
213.3 |
220.5 |
| C3' |
C2' |
C1' |
O2' |
120.2 |
118.3 |
| C3' |
C2' |
C1' |
H2' |
249.2 |
242.0 |
| O2' |
C2' |
C1' |
H2' |
129.0 |
123.7 |
| C1' |
C2' |
O2' |
HB |
180.0 |
293.6 |
| H2' |
C2' |
C3' |
H3' |
102.5 |
102.4 |
| C3' |
C2' |
H2' |
O2' |
242.0 |
236.3 |
| C3' |
C2' |
H2' |
C1' |
103.0 |
112.6 |
| O2' |
C2' |
H2' |
C1' |
221.0 |
236.3 |
| H2' |
C2' |
O2' |
HB |
309.0 |
57.3 |
| H2' |
C2' |
C1' |
H1' |
42.0 |
36.7 |
| HB |
O2' |
C2' |
C1' |
180.0 |
293.6 |
| HB |
O2' |
C2' |
H2' |
309.0 |
57.3 |
| N1 |
C1' |
H1' |
O4' |
226.6 |
237.2 |
| N1 |
C1' |
H1' |
C2' |
116.0 |
123.1 |
| O4' |
C1' |
H1' |
C2' |
249.4 |
245.9 |
| H1' |
C1' |
C2' |
H2' |
42.0 |
36.7 |
| O3' |
P |
O3P |
O1P |
240.8 |
240.0 |
| O3' |
P |
O3P |
O2P |
117.0 |
120.0 |
| O1P |
P |
O3P |
O2P |
236.1 |
240.0 |
| O3P |
P |
O2P |
H2P |
294.6 |
59.9 |
| H3P |
O3P |
P |
O1P |
299.2 |
300.0 |
| H3P |
O3P |
P |
O2P |
63.1 |
60.0 |
| O3' |
P |
O1P |
O3P |
117.1 |
120.0 |
| O3' |
P |
O1P |
O2P |
239.8 |
240.1 |
| O1P |
P |
O3P |
H3P |
299.2 |
300.0 |
| O3P |
P |
O1P |
O2P |
122.6 |
120.0 |
| O1P |
P |
O2P |
H2P |
59.8 |
179.9 |
| O3' |
P |
O2P |
O3P |
245.4 |
240.0 |
| O3' |
P |
O2P |
O1P |
120.2 |
120.0 |
| O2P |
P |
O3P |
H3P |
63.1 |
60.0 |
| O3P |
P |
O2P |
O1P |
234.7 |
240.0 |