PDB Chemical Component U2S

Ideal Model

Chemical Description

Name 1-(5-deoxy-5-morpholin-4-yl-alpha-L-arabinofuranosyl)pyrimidine-2,4(1H,3H)-dione
Formula C13 H19 N3 O6
Formal charge 0
Molecular weight 313.306 g/mol
Component type NON-POLYMER

Chemical features

Atom count 41
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Bond count 43
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 1-(5-deoxy-5-morpholin-4-yl-alpha-L-arabinofuranosyl)pyrimidine-2,4(1H,3H)-dione
Systematic name (OpenEye OEToolkits) 1-[(2R,3R,4R,5S)-3,4-dihydroxy-5-(morpholin-4-ylmethyl)oxolan-2-yl]pyrimidine-2,4-dione

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@@H]1[C@@H](O)[C@@H](O[C@H]1CN2CCOCC2)N3C=CC(=O)NC3=O
SMILES (CACTVS) O[CH]1[CH](O)[CH](O[CH]1CN2CCOCC2)N3C=CC(=O)NC3=O
Stereo SMILES (OpenEye) C1COCCN1C[C@H]2[C@@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O
InChI descriptor InChI=1S/C13H19N3O6/c17-9-1-2-16(13(20)14-9)12-11(19)10(18)8(22-12)7-15-3-5-21-6-4-15/h1-2,8,10-12,18-19H,3-7H2,(H,14,17,20)/t8-,10-,11+,12+/m0/s1
InChIKey descriptor LZYQLCIKQTYBER-OHBODLIOSA-N

Status Information

Last modified 2011-06-04
Created 2008-06-10
Release status REL
Model PDB code 3D6P
Processing site RCSB