PDB Chemical Component U2S

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for U2S

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C4 C5 1.394 1.416
C4 N3 1.398 1.348
C4 O4 1.228 1.218
C5 C6 1.398 1.349
C6 N1 1.422 1.369
N1 C1' 1.504 1.464
N1 C2 1.395 1.346
N3 C2 1.394 1.346
OAM CAK 1.443 1.430
OAM CAJ 1.445 1.430
CAK CAM 1.538 1.531
CAM NBA 1.474 1.469
CAJ CAL 1.532 1.531
CAL NBA 1.475 1.470
NBA C5' 1.462 1.469
C5' C4' 1.538 1.530
C4' O4' 1.475 1.436
C4' C3' 1.507 1.549
O4' C1' 1.458 1.433
C3' O3' 1.423 1.429
C3' C2' 1.510 1.553
C2' O2' 1.414 1.429
C2' C1' 1.549 1.544
C2 O2 1.231 1.215
C5 H5 1.079 1.080
C6 H6 1.080 1.080
N3 HN3 1.000 0.970
CAK HAK 1.100 1.090
CAK HAKA 1.100 1.090
CAM HAM 1.100 1.091
CAM HAMA 1.100 1.090
CAJ HAJ 1.100 1.090
CAJ HAJA 1.100 1.090
CAL HAL 1.100 1.090
CAL HALA 1.100 1.089
C5' H5' 1.100 1.090
C5' H5'A 1.100 1.090
C4' H4' 1.099 1.090
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.967
C1' H1' 1.100 1.090

Bond Angles for U2S

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C5 C4 N3 119.6 119.4
C5 C4 O4 121.2 120.3
C4 C5 C6 118.7 119.1
C4 C5 H5 120.6 120.4
N3 C4 O4 119.2 120.3
C4 N3 C2 122.3 120.2
C4 N3 HN3 118.8 119.9
C5 C6 N1 121.7 119.7
C6 C5 H5 120.7 120.5
C5 C6 H6 119.2 120.2
C6 N1 C1' 121.5 119.7
C6 N1 C2 119.0 120.6
N1 C6 H6 119.2 120.1
C1' N1 C2 119.5 119.7
N1 C1' O4' 109.4 109.8
N1 C1' C2' 114.5 109.8
N1 C1' H1' 104.8 109.9
N1 C2 N3 118.7 120.9
N1 C2 O2 121.9 119.5
N3 C2 O2 119.3 119.6
C2 N3 HN3 118.9 119.8
CAK OAM CAJ 111.4 113.8
OAM CAK CAM 108.7 109.2
OAM CAK HAK 109.8 109.5
OAM CAK HAKA 109.9 109.5
OAM CAJ CAL 107.1 109.3
OAM CAJ HAJ 110.3 109.5
OAM CAJ HAJA 110.7 109.4
CAK CAM NBA 110.5 109.3
CAM CAK HAK 109.7 109.5
CAM CAK HAKA 109.9 109.5
CAK CAM HAM 109.1 109.5
CAK CAM HAMA 108.9 109.5
CAM NBA CAL 113.0 110.8
CAM NBA C5' 107.1 111.0
NBA CAM HAM 109.1 109.5
NBA CAM HAMA 108.9 109.5
CAJ CAL NBA 110.1 109.3
CAL CAJ HAJ 110.3 109.5
CAL CAJ HAJA 110.8 109.5
CAJ CAL HAL 109.3 109.5
CAJ CAL HALA 109.2 109.5
CAL NBA C5' 105.9 111.0
NBA CAL HAL 109.3 109.5
NBA CAL HALA 109.1 109.5
NBA C5' C4' 112.1 109.5
NBA C5' H5' 108.6 109.5
NBA C5' H5'A 108.0 109.5
C5' C4' O4' 121.8 110.3
C5' C4' C3' 110.3 110.3
C4' C5' H5' 108.6 109.5
C4' C5' H5'A 108.0 109.5
C5' C4' H4' 97.6 110.3
O4' C4' C3' 99.4 105.1
C4' O4' C1' 102.2 110.0
O4' C4' H4' 108.8 110.3
C4' C3' O3' 114.9 111.2
C4' C3' C2' 99.7 101.0
C3' C4' H4' 120.6 110.4
C4' C3' H3' 112.3 111.2
O4' C1' C2' 105.1 107.5
O4' C1' H1' 114.2 109.8
O3' C3' C2' 109.1 111.1
O3' C3' H3' 103.5 111.0
C3' O3' HO3' 109.5 114.1
C3' C2' O2' 102.5 110.9
C3' C2' C1' 103.1 102.3
C2' C3' H3' 117.8 111.1
C3' C2' H2' 118.2 110.8
O2' C2' C1' 111.2 110.8
O2' C2' H2' 111.0 110.7
C2' O2' HO2' 109.5 114.0
C1' C2' H2' 110.4 111.0
C2' C1' H1' 109.1 109.9
HAK CAK HAKA 108.8 109.6
HAM CAM HAMA 110.3 109.5
HAJ CAJ HAJA 107.6 109.5
HAL CAL HALA 109.9 109.6
H5' C5' H5'A 111.6 109.4

Torsion Angles for U2S

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N3 C4 C5 O4 182.0 180.3
C5 C4 N3 C2 358.4 0.0
C5 C4 N3 HN3 178.4 179.9
C4 C5 C6 N1 0.8 360.0
C6 C5 C4 H5 180.0 180.1
C4 C5 C6 H6 180.8 180.0
C5 C4 N3 O4 178.0 179.7
N3 C4 C5 C6 0.9 0.0
N3 C4 C5 H5 180.9 180.0
N1 C2 N3 C4 0.5 359.9
C4 N3 C2 O2 182.5 180.0
C2 N3 C4 HN3 180.0 180.1
C5 C4 O4 N3 182.0 180.3
O4 C4 C5 C6 178.9 179.7
O4 C4 C5 H5 358.9 359.7
O4 C4 N3 C2 180.4 180.3
O4 C4 N3 HN3 0.4 0.3
C6 C5 C4 N3 0.9 0.0
C6 C5 C4 O4 178.9 179.7
C4 C5 C6 H5 180.0 179.9
C5 C6 N1 C1' 180.3 180.0
C5 C6 N1 C2 358.2 360.0
N1 C6 C5 H6 180.0 180.0
N1 C6 C5 H5 180.8 180.0
C5 C6 N1 H6 180.0 180.0
C1' N1 C6 C2 182.1 180.1
C6 N1 C1' O4' 13.9 233.5
C6 N1 C1' C2' 256.2 115.4
C6 N1 C1' H1' 136.7 354.4
C6 N1 C2 N3 1.1 0.1
C6 N1 C2 O2 179.1 180.0
C6 N1 C1' C2 177.8 179.9
C1' N1 C6 H6 0.3 360.0
C1' N1 C2 N3 179.0 180.0
C1' N1 C2 O2 357.0 359.9
C4' O4' C1' N1 267.0 242.2
O4' C1' N1 C2' 117.6 118.1
O4' C1' N1 H1' 237.1 239.1
C3' C2' C1' N1 122.5 140.8
O2' C2' C1' N1 231.6 259.1
N1 C1' C2' H2' 355.3 22.6
C2' C1' N1 H1' 119.5 121.0
C4 N3 C2 N1 0.5 359.9
C6 N1 C2 C1' 182.1 180.1
C2 N1 C6 H6 178.1 179.9
C2 N1 C1' O4' 196.0 53.6
C2 N1 C1' C2' 78.4 295.5
C2 N1 C1' H1' 318.9 174.5
N3 C2 N1 O2 182.0 180.1
N1 C2 N3 HN3 180.5 180.0
C2 N3 C4 O4 180.4 180.3
C4 N3 C2 HN3 180.0 179.9
N1 C2 N3 O2 178.0 179.9
CAK OAM CAJ CAL 65.5 58.6
CAK OAM CAJ HAJ 185.5 178.6
CAK OAM CAJ HAJA 304.6 298.7
OAM CAK CAM NBA 54.5 56.8
CAM CAK OAM HAK 240.0 240.1
CAM CAK OAM HAKA 120.3 119.9
OAM CAK CAM HAM 174.5 176.8
OAM CAK CAM HAMA 294.9 296.9
HAK CAK OAM HAKA 240.3 239.8
CAJ OAM CAK CAM 296.4 301.4
CAJ OAM CAK HAK 56.4 61.3
CAJ OAM CAK HAKA 176.1 181.5
OAM CAJ CAL NBA 301.2 303.2
CAL CAJ OAM HAJ 240.0 240.0
CAL CAJ OAM HAJA 120.9 119.9
OAM CAJ CAL HAL 61.2 63.1
OAM CAJ CAL HALA 181.5 183.2
HAJ CAJ OAM HAJA 241.0 239.9
CAM CAK OAM CAJ 296.4 301.4
OAM CAK CAM HAK 120.0 119.9
OAM CAK CAM HAKA 239.7 240.1
CAK CAM NBA CAL 308.5 301.4
CAK CAM NBA C5' 192.2 177.6
NBA CAM CAK HAM 240.0 240.0
NBA CAM CAK HAMA 119.6 120.0
HAK CAK CAM HAKA 119.6 120.2
HAM CAM CAK HAMA 239.6 239.9
NBA CAM CAK HAK 294.5 297.0
NBA CAM CAK HAKA 174.8 176.8
CAK CAM NBA HAM 120.0 119.9
CAK CAM NBA HAMA 240.4 240.0
CAJ CAL NBA CAM 54.0 58.6
CAL NBA CAM C5' 116.2 123.8
CAM NBA CAL HAL 294.0 298.7
CAM NBA CAL HALA 173.7 178.5
CAM NBA C5' C4' 229.8 284.3
CAM NBA C5' H5' 349.8 44.3
CAM NBA C5' H5'A 110.9 164.3
HAM CAM NBA HAMA 120.5 120.1
OAM CAJ CAL HAJ 120.0 120.0
OAM CAJ CAL HAJA 239.1 240.1
CAM NBA CAL CAJ 54.0 58.6
CAJ CAL NBA C5' 171.0 182.4
NBA CAL CAJ HAL 240.0 240.1
NBA CAL CAJ HALA 119.7 120.0
HAJ CAJ CAL HAJA 119.1 120.1
HAL CAL CAJ HALA 239.7 239.9
CAM NBA CAL C5' 243.0 236.2
CAL NBA CAM HAM 188.5 181.4
CAL NBA CAM HAMA 68.0 61.4
NBA CAL CAJ HAJ 181.2 183.2
NBA CAL CAJ HAJA 62.1 63.1
CAJ CAL NBA HAL 120.0 119.9
CAJ CAL NBA HALA 240.2 240.0
CAL NBA C5' C4' 108.9 160.6
CAL NBA C5' H5' 228.9 280.6
CAL NBA C5' H5'A 350.0 40.6
HAL CAL NBA HALA 120.2 120.1
CAM NBA C5' CAL 120.9 123.7
C5' NBA CAM HAM 72.3 57.6
C5' NBA CAM HAMA 311.8 297.5
C5' NBA CAL HAL 51.0 62.5
C5' NBA CAL HALA 290.7 302.4
NBA C5' C4' O4' 346.8 297.7
NBA C5' C4' C3' 231.1 182.0
C4' C5' NBA H5' 240.0 240.0
C4' C5' NBA H5'A 118.9 120.0
NBA C5' C4' H4' 104.5 59.8
H5' C5' NBA H5'A 238.9 240.0
NBA C5' C4' H5' 120.0 120.0
NBA C5' C4' H5'A 241.2 240.0
O4' C4' C5' C3' 115.7 115.7
C5' C4' O4' C1' 187.0 216.6
O4' C4' C5' H4' 242.3 237.9
C5' C4' C3' O3' 298.0 273.3
C5' C4' C3' C2' 181.5 155.3
C3' C4' C5' H4' 126.6 122.2
C5' C4' C3' H3' 55.9 37.4
H5' C5' C4' H5'A 121.2 119.9
N1 C1' O4' C4' 267.0 242.2
C5' C4' O4' C3' 238.9 241.1
O4' C4' C5' H5' 226.8 177.6
O4' C4' C5' H5'A 105.6 57.7
C5' C4' O4' H4' 112.0 122.1
O4' C4' C3' O3' 168.9 154.4
O4' C4' C3' C2' 52.5 36.4
C3' C4' O4' H4' 233.1 241.0
O4' C4' C3' H3' 286.9 278.5
C4' O4' C1' C2' 30.4 1.7
C4' O4' C1' H1' 149.9 121.3
C5' C4' C3' O4' 129.1 118.9
C3' C4' C5' H5' 111.1 61.9
C3' C4' C5' H5'A 349.9 302.0
C5' C4' C3' H4' 247.6 237.8
C3' C4' O4' C1' 308.1 335.6
O4' C4' C3' H4' 118.5 118.9
O3' C3' C4' C2' 116.4 117.9
O3' C3' C4' H3' 242.0 235.8
C4' C3' O3' HO3' 345.7 180.0
C4' C3' C2' O2' 211.2 207.7
C4' C3' C2' C1' 326.8 325.9
C2' C3' C4' H3' 125.6 117.9
C4' C3' C2' H2' 88.9 84.3
O4' C1' N1 C2 196.0 53.6
N1 C1' O4' C2' 236.6 240.5
N1 C1' O4' H1' 117.1 120.9
C1' O4' C4' C3' 308.1 335.6
C1' O4' C4' H4' 75.0 94.6
C3' C2' C1' O4' 2.4 21.3
O2' C2' C1' O4' 111.6 139.6
O4' C1' C2' H2' 235.2 263.1
C2' C1' O4' H1' 240.5 240.4
C4' C3' O3' C2' 249.1 248.4
O3' C3' C4' H4' 50.4 35.4
C4' C3' O3' H3' 122.8 124.3
O3' C3' C2' O2' 90.5 89.7
O3' C3' C2' C1' 206.1 207.9
C2' C3' O3' H3' 233.8 235.9
O3' C3' C2' H2' 328.1 326.3
N1 C1' C2' C3' 122.5 140.8
C4' C3' C2' O3' 120.8 118.0
C2' C3' C4' H4' 294.0 277.5
C4' C3' C2' H3' 238.2 242.1
O4' C1' C2' C3' 2.4 21.3
O3' C3' C2' H3' 117.5 124.1
C2' C3' O3' HO3' 96.6 291.6
O2' C2' C3' C1' 244.4 241.8
O2' C2' C3' H2' 122.3 123.4
C3' C2' O2' HO2' 309.7 298.6
C1' C2' C3' H2' 237.9 241.6
C3' C2' C1' H1' 239.5 261.8
N1 C1' C2' O2' 231.6 259.1
O4' C1' C2' O2' 111.6 139.6
C3' C2' O2' C1' 109.6 112.9
O2' C2' C3' H3' 333.0 325.6
C3' C2' O2' H2' 232.9 236.5
C1' C2' O2' H2' 123.3 123.7
O2' C2' C1' H1' 348.7 20.1
C2' C1' N1 C2 78.4 295.5
N1 C1' C2' O4' 120.1 119.5
N1 C1' C2' H1' 243.0 239.0
O4' C1' C2' H1' 122.9 119.5
C3' C2' C1' O2' 250.8 241.8
C1' C2' C3' H3' 88.6 83.8
C3' C2' C1' H2' 127.2 118.3
O2' C2' C1' H2' 236.3 236.5
C1' C2' O2' HO2' 200.1 185.8
N1 C2 O2 N3 182.0 180.1
O2 C2 N3 HN3 2.5 0.1
H5 C5 C4 N3 180.9 180.0
H5 C5 C4 O4 358.9 359.7
C4 C5 H5 C6 180.0 180.1
H5 C5 C6 N1 180.8 180.0
H5 C5 C6 H6 0.8 0.1
C5 C6 H6 N1 180.0 180.0
H6 C6 C5 H5 0.8 0.1
H6 C6 N1 C1' 0.3 360.0
H6 C6 N1 C2 178.1 179.9
HN3 N3 C4 O4 0.4 0.3
C4 N3 HN3 C2 180.0 180.1
HN3 N3 C2 O2 2.5 0.1
HAK CAK OAM CAJ 56.4 61.3
OAM CAK HAK CAM 240.6 240.3
OAM CAK HAK HAKA 120.4 120.1
HAK CAK CAM NBA 294.5 297.0
CAM CAK HAK HAKA 239.7 239.9
HAK CAK CAM HAM 54.5 56.9
HAK CAK CAM HAMA 174.9 177.0
HAKA CAK OAM CAJ 176.1 181.5
OAM CAK HAKA CAM 119.6 119.7
OAM CAK HAKA HAK 239.7 239.9
HAKA CAK CAM NBA 174.8 176.8
CAM CAK HAKA HAK 120.2 120.1
HAKA CAK CAM HAM 294.8 296.7
HAKA CAK CAM HAMA 55.3 56.8
CAK CAM HAM NBA 239.2 240.2
HAM CAM CAK HAK 54.5 56.9
HAM CAM CAK HAKA 294.8 296.7
CAK CAM HAM HAMA 119.6 120.1
HAM CAM NBA CAL 188.5 181.4
HAM CAM NBA C5' 72.3 57.6
NBA CAM HAM HAMA 240.4 239.9
CAK CAM HAMA NBA 120.6 119.8
HAMA CAM CAK HAK 174.9 177.0
HAMA CAM CAK HAKA 55.3 56.8
CAK CAM HAMA HAM 240.3 239.9
HAMA CAM NBA CAL 68.0 61.4
HAMA CAM NBA C5' 311.8 297.5
NBA CAM HAMA HAM 119.8 120.1
OAM CAJ HAJ CAL 241.9 240.2
OAM CAJ HAJ HAJA 120.9 120.0
HAJ CAJ CAL NBA 181.2 183.2
CAL CAJ HAJ HAJA 239.0 239.9
HAJ CAJ CAL HAL 301.2 303.1
HAJ CAJ CAL HALA 61.4 63.3
OAM CAJ HAJA CAL 118.7 119.8
OAM CAJ HAJA HAJ 239.4 239.9
HAJA CAJ CAL NBA 62.1 63.1
CAL CAJ HAJA HAJ 120.6 120.1
HAJA CAJ CAL HAL 182.1 183.0
HAJA CAJ CAL HALA 302.4 303.1
CAJ CAL HAL NBA 239.5 240.2
HAL CAL CAJ HAJ 301.2 303.1
HAL CAL CAJ HAJA 182.1 183.0
CAJ CAL HAL HALA 119.8 120.1
HAL CAL NBA C5' 51.0 62.5
NBA CAL HAL HALA 240.3 239.9
CAJ CAL HALA NBA 120.3 119.8
HALA CAL CAJ HAJ 61.4 63.3
HALA CAL CAJ HAJA 302.4 303.1
CAJ CAL HALA HAL 240.1 239.9
HALA CAL NBA C5' 290.7 302.4
NBA CAL HALA HAL 119.8 120.1
NBA C5' H5' C4' 237.8 240.0
NBA C5' H5' H5'A 118.9 120.0
H5' C5' C4' O4' 226.8 177.6
H5' C5' C4' C3' 111.1 61.9
C4' C5' H5' H5'A 241.0 240.0
H5' C5' C4' H4' 344.5 299.7
NBA C5' H5'A C4' 121.5 120.1
NBA C5' H5'A H5' 240.8 240.0
H5'A C5' C4' O4' 105.6 57.7
H5'A C5' C4' C3' 349.9 302.0
C4' C5' H5'A H5' 119.3 120.0
H5'A C5' C4' H4' 223.3 179.8
C5' C4' H4' O4' 232.7 237.9
C5' C4' H4' C3' 119.0 122.2
H4' C4' C5' H5' 344.5 299.7
H4' C4' C5' H5'A 223.3 179.8
O4' C4' H4' C3' 246.3 244.3
H4' C4' O4' C1' 75.0 94.6
H4' C4' C3' O3' 50.4 35.4
H4' C4' C3' C2' 294.0 277.5
H4' C4' C3' H3' 168.3 159.6
C4' C3' H3' O3' 235.5 235.7
C4' C3' H3' C2' 115.0 111.6
H3' C3' C4' H4' 168.3 159.6
O3' C3' H3' C2' 239.6 235.8
H3' C3' O3' HO3' 222.9 55.7
H3' C3' C2' O2' 333.0 325.6
H3' C3' C2' C1' 88.6 83.8
H3' C3' C2' H2' 210.6 202.2
HO3' O3' C3' C2' 96.6 291.6
HO3' O3' C3' H3' 222.9 55.7
C3' C2' H2' O2' 117.9 123.5
C3' C2' H2' C1' 241.7 247.1
H2' C2' C3' H3' 210.6 202.2
O2' C2' H2' C1' 123.8 123.5
H2' C2' O2' HO2' 76.7 62.1
H2' C2' C1' H1' 112.4 143.5
HO2' O2' C2' C1' 200.1 185.8
HO2' O2' C2' H2' 76.7 62.1
H1' C1' N1 C2 318.9 174.5
N1 C1' H1' O4' 240.3 239.1
N1 C1' H1' C2' 123.1 121.0
O4' C1' H1' C2' 242.7 241.9
H1' C1' C2' H2' 112.4 143.5