PDB Chemical Component TXS

Ideal Model

Chemical Description

Name 1-(2,5-dideoxy-5-pyrrolidin-1-yl-beta-L-erythro-pentofuranosyl)-5-methylpyrimidine-2,4(1H,3H)-dione
Synonyms 5'-deoxy-5'-pyrrolidin-1-ylthymidine
Formula C14 H21 N3 O4
Formal charge 0
Molecular weight 295.334 g/mol
Component type NON-POLYMER

Chemical features

Atom count 42
Chiral atom count 3
Chiral atoms C4' C3' C1'
Bond count 44
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 1-(2,5-dideoxy-5-pyrrolidin-1-yl-beta-L-erythro-pentofuranosyl)-5-methylpyrimidine-2,4(1H,3H)-dione
Systematic name (OpenEye OEToolkits) 1-[(2S,4R,5S)-4-hydroxy-5-(pyrrolidin-1-ylmethyl)oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@@H]2C[C@@H](O)[C@H](CN3CCCC3)O2)C(=O)NC1=O
SMILES (CACTVS) CC1=CN([CH]2C[CH](O)[CH](CN3CCCC3)O2)C(=O)NC1=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@@H]2C[C@H]([C@@H](O2)CN3CCCC3)O
InChI descriptor InChI=1S/C14H21N3O4/c1-9-7-17(14(20)15-13(9)19)12-6-10(18)11(21-12)8-16-4-2-3-5-16/h7,10-12,18H,2-6,8H2,1H3,(H,15,19,20)/t10-,11+,12+/m1/s1
InChIKey descriptor XUSBTLVYPZUOAW-WOPDTQHZSA-N

Status Information

Last modified 2020-06-17
Created 2008-05-28
Release status REL
Model PDB code 3D8Z
Processing site PDBJ