PDB Chemical Component TXS

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TXS

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C21 C22 1.540 1.540
C21 N25 1.475 1.479
C22 C23 1.535 1.545
C23 C24 1.529 1.550
C24 N25 1.474 1.485
N25 C5' 1.468 1.469
C5' C4' 1.528 1.530
C4' O4' 1.450 1.444
C4' C3' 1.549 1.545
O4' C1' 1.435 1.444
C3' O3' 1.432 1.430
C3' C2' 1.540 1.545
C2' C1' 1.526 1.545
C1' N1 1.485 1.465
N1 C6 1.401 1.369
N1 C2 1.411 1.345
C6 C5 1.385 1.350
C5 C5M 1.523 1.507
C5 C4 1.395 1.416
C4 O4 1.229 1.218
C4 N3 1.408 1.348
N3 C2 1.409 1.347
C2 O2 1.228 1.216
C21 H21 1.100 1.090
C21 H21A 1.100 1.091
C22 H22 1.100 1.090
C22 H22A 1.099 1.090
C23 H23 1.100 1.090
C23 H23A 1.100 1.090
C24 H24 1.100 1.090
C24 H24A 1.100 1.090
C5' H5' 1.100 1.090
C5' H5'A 1.100 1.090
C4' H4' 1.100 1.090
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
C2' H2' 1.100 1.090
C2' H2'A 1.100 1.089
C1' H1' 1.100 1.089
C6 H6 1.080 1.080
C5M H5M 1.101 1.091
C5M H5MA 1.100 1.090
C5M H5MB 1.100 1.090
N3 HN3 1.000 0.969

Bond Angles for TXS

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C22 C21 N25 105.1 107.0
C21 C22 C23 105.1 105.2
C22 C21 H21 111.0 110.0
C22 C21 H21A 111.9 109.9
C21 C22 H22 111.0 110.3
C21 C22 H22A 111.9 110.3
C21 N25 C24 104.4 105.8
C21 N25 C5' 109.0 111.0
N25 C21 H21 110.9 109.9
N25 C21 H21A 111.9 109.9
C22 C23 C24 104.6 102.9
C23 C22 H22 111.0 110.3
C23 C22 H22A 111.9 110.3
C22 C23 H23 111.1 110.7
C22 C23 H23A 112.2 110.7
C23 C24 N25 103.7 103.2
C24 C23 H23 111.2 110.7
C24 C23 H23A 112.2 110.7
C23 C24 H24 111.4 110.7
C23 C24 H24A 112.7 110.6
C24 N25 C5' 109.9 111.0
N25 C24 H24 111.4 110.7
N25 C24 H24A 112.7 110.7
N25 C5' C4' 106.8 109.5
N25 C5' H5' 110.4 109.4
N25 C5' H5'A 111.0 109.5
C5' C4' O4' 116.3 110.3
C5' C4' C3' 114.1 110.4
C4' C5' H5' 110.4 109.5
C4' C5' H5'A 111.0 109.5
C5' C4' H4' 99.3 110.3
O4' C4' C3' 103.2 104.8
C4' O4' C1' 92.2 105.3
O4' C4' H4' 111.0 110.4
C4' C3' O3' 107.2 110.5
C4' C3' C2' 102.6 104.1
C3' C4' H4' 113.3 110.5
C4' C3' H3' 115.3 110.5
O4' C1' C2' 100.9 104.8
O4' C1' N1 119.5 110.4
O4' C1' H1' 118.9 110.4
O3' C3' C2' 109.9 110.5
O3' C3' H3' 108.7 110.4
C3' O3' HO3' 109.5 114.0
C3' C2' C1' 95.7 104.0
C2' C3' H3' 112.9 110.7
C3' C2' H2' 114.4 110.5
C3' C2' H2'A 117.1 110.5
C2' C1' N1 127.0 110.3
C1' C2' H2' 114.3 110.5
C1' C2' H2'A 117.1 110.5
C2' C1' H1' 108.6 110.4
C1' N1 C6 113.3 119.7
C1' N1 C2 126.0 119.7
N1 C1' H1' 81.7 110.4
C6 N1 C2 120.5 120.7
N1 C6 C5 120.8 119.6
N1 C6 H6 119.6 120.2
N1 C2 N3 118.2 120.9
N1 C2 O2 121.9 119.6
C6 C5 C5M 118.0 120.4
C6 C5 C4 119.6 119.1
C5 C6 H6 119.6 120.2
C5M C5 C4 122.4 120.4
C5 C5M H5M 109.5 109.5
C5 C5M H5MA 109.5 109.5
C5 C5M H5MB 109.4 109.5
C5 C4 O4 120.3 120.3
C5 C4 N3 120.3 119.4
O4 C4 N3 119.4 120.3
C4 N3 C2 120.5 120.2
C4 N3 HN3 119.7 119.9
N3 C2 O2 119.9 119.5
C2 N3 HN3 119.8 119.9
H21 C21 H21A 106.1 110.1
H22 C22 H22A 106.1 110.3
H23 C23 H23A 105.7 110.8
H24 C24 H24A 105.1 110.7
H5' C5' H5'A 107.4 109.5
H2' C2' H2'A 99.4 110.6
H5M C5M H5MA 109.4 109.5
H5M C5M H5MB 109.5 109.4
H5MA C5M H5MB 109.5 109.5

Torsion Angles for TXS

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C22 C21 N25 C24 323.2 334.7
C22 C21 N25 C5' 205.9 214.2
N25 C21 C22 H21 240.0 240.6
N25 C21 C22 H21A 121.7 119.3
C21 C22 C23 C24 8.5 22.0
C23 C22 C21 H22 240.0 241.0
C23 C22 C21 H22A 121.7 118.9
C21 C22 C23 H23 128.5 140.3
C21 C22 C23 H23A 246.6 263.6
H21 C21 C22 H21A 241.7 238.7
H22 C22 C21 H22A 241.7 237.9
N25 C21 C22 C23 16.8 1.2
C22 C21 N25 H21 120.0 119.4
C22 C21 N25 H21A 238.4 240.7
N25 C21 C22 H22 136.8 120.2
N25 C21 C22 H22A 255.1 242.3
C23 C24 N25 C21 42.2 39.2
C24 N25 C21 C5' 117.3 120.5
C21 N25 C24 H24 282.2 280.8
C21 N25 C24 H24A 164.4 157.6
C21 N25 C5' C4' 219.4 190.0
C21 N25 C5' H5' 339.4 310.0
C21 N25 C5' H5'A 98.4 70.0
H21 C21 N25 H21A 118.4 121.3
C23 C22 C21 N25 16.8 1.2
C23 C22 C21 H21 136.8 120.6
C23 C22 C21 H21A 255.1 241.9
C21 C22 C23 H22 120.0 118.9
C21 C22 C23 H22A 238.3 241.1
C22 C23 C24 N25 329.2 322.6
C24 C23 C22 H23 240.0 241.7
C24 C23 C22 H23A 121.9 118.3
C22 C23 C24 H24 89.2 81.0
C22 C23 C24 H24A 207.1 204.2
H22 C22 C23 H22A 118.3 122.1
H23 C23 C22 H23A 241.9 236.7
C21 N25 C24 C23 42.2 39.2
C24 C23 C22 H22 248.5 263.0
C24 C23 C22 H22A 130.2 140.9
C22 C23 C24 H23 120.0 118.3
C22 C23 C24 H23A 238.1 241.6
C23 C24 N25 C5' 159.0 159.8
N25 C24 C23 H24 240.0 241.6
N25 C24 C23 H24A 122.1 118.4
H23 C23 C24 H23A 118.2 123.3
H24 C24 C23 H24A 242.1 236.8
C21 N25 C24 C5' 243.3 239.5
C24 N25 C21 H21 203.2 215.3
C24 N25 C21 H21A 84.9 94.0
N25 C24 C23 H23 209.2 204.2
N25 C24 C23 H23A 91.0 80.9
C23 C24 N25 H24 120.0 118.5
C23 C24 N25 H24A 237.9 241.6
C24 N25 C5' C4' 105.6 72.6
C24 N25 C5' H5' 225.6 192.6
C24 N25 C5' H5'A 344.6 312.6
H24 C24 N25 H24A 117.9 123.2
C21 N25 C5' C24 113.8 117.4
C5' N25 C21 H21 85.9 94.8
C5' N25 C21 H21A 327.5 333.5
C5' N25 C24 H24 39.0 41.3
C5' N25 C24 H24A 281.1 278.1
N25 C5' C4' O4' 242.3 298.5
N25 C5' C4' C3' 122.3 183.2
C4' C5' N25 H5' 240.0 240.0
C4' C5' N25 H5'A 121.0 120.1
N25 C5' C4' H4' 1.4 60.7
H5' C5' N25 H5'A 241.0 240.0
N25 C5' C4' H5' 120.0 120.0
N25 C5' C4' H5'A 239.0 240.0
O4' C4' C5' C3' 120.0 115.4
C5' C4' O4' C1' 181.5 200.6
O4' C4' C5' H4' 240.9 237.8
C5' C4' C3' O3' 264.4 261.5
C5' C4' C3' C2' 148.7 142.8
C3' C4' C5' H4' 120.9 122.4
C5' C4' C3' H3' 25.6 24.0
H5' C5' C4' H5'A 119.0 120.0
C5' C4' O4' C3' 234.3 241.2
O4' C4' C5' H5' 122.3 178.6
O4' C4' C5' H5'A 3.3 58.5
C5' C4' O4' H4' 112.6 122.2
O4' C4' C3' O3' 137.3 142.7
O4' C4' C3' C2' 21.7 24.0
C3' C4' O4' H4' 238.3 241.0
O4' C4' C3' H3' 258.5 265.2
C4' O4' C1' C2' 67.0 40.6
C4' O4' C1' N1 211.4 159.3
C4' O4' C1' H1' 308.5 281.7
C5' C4' C3' O4' 127.1 118.8
C3' C4' C5' H5' 2.3 63.2
C3' C4' C5' H5'A 243.3 303.2
C5' C4' C3' H4' 247.2 237.7
C3' C4' O4' C1' 307.2 319.5
O4' C4' C3' H4' 120.2 118.9
O3' C3' C4' C2' 115.7 118.7
O3' C3' C4' H3' 238.8 237.5
C4' C3' O3' HO3' 50.4 180.0
C4' C3' C2' C1' 17.2 0.0
C2' C3' C4' H3' 123.1 118.8
C4' C3' C2' H2' 137.1 118.6
C4' C3' C2' H2'A 252.8 241.4
C1' O4' C4' C3' 307.2 319.5
C1' O4' C4' H4' 68.9 78.4
C3' C2' C1' O4' 307.2 336.0
C2' C1' O4' N1 215.6 241.2
O4' C1' C2' H2' 187.2 217.4
O4' C1' C2' H2'A 71.5 94.6
C2' C1' O4' H1' 118.5 118.9
O4' C1' N1 C6 64.6 1.5
O4' C1' N1 C2 241.0 181.2
N1 C1' O4' H1' 262.9 237.6
C4' C3' O3' C2' 249.3 245.3
O3' C3' C4' H4' 17.2 23.8
C4' C3' O3' H3' 125.3 122.6
O3' C3' C2' C1' 263.4 241.4
C2' C3' O3' H3' 236.0 237.2
O3' C3' C2' H2' 23.4 0.0
O3' C3' C2' H2'A 139.1 122.7
C4' C3' C2' O3' 113.7 118.6
C2' C3' C4' H4' 261.5 265.1
C4' C3' C2' H3' 235.2 241.3
O4' C1' C2' C3' 307.2 336.0
O3' C3' C2' H3' 121.5 122.6
C2' C3' O3' HO3' 161.1 294.7
C3' C2' C1' N1 166.6 217.2
C1' C2' C3' H2' 240.0 241.4
C1' C2' C3' H2'A 124.4 118.7
C3' C2' C1' H1' 72.9 94.8
H2' C2' C3' H2'A 244.3 237.3
O4' C1' C2' N1 140.6 118.8
O4' C1' C2' H1' 234.2 241.2
C1' C2' C3' H3' 141.9 118.7
C3' C2' C1' H2' 120.0 118.6
C3' C2' C1' H2'A 235.6 241.4
C2' C1' N1 C6 198.9 116.9
C2' C1' N1 C2 15.3 296.5
N1 C1' C2' H1' 93.6 122.3
H2' C2' C1' H2'A 115.6 122.7
O4' C1' N1 C2' 225.7 244.7
O4' C1' N1 H1' 118.7 122.3
N1 C1' C2' H2' 46.6 98.6
N1 C1' C2' H2'A 290.9 335.8
C2' C1' N1 H1' 252.9 237.7
C6 N1 C1' C2 183.6 180.4
C1' N1 C6 C5 178.1 179.9
C1' N1 C6 H6 358.1 359.9
C1' N1 C2 N3 182.4 179.8
C1' N1 C2 O2 2.9 0.1
C1' N1 C6 C2 176.6 179.6
C6 N1 C1' H1' 306.0 239.2
C6 N1 C2 N3 358.5 359.4
C6 N1 C2 O2 179.1 179.7
N1 C6 C5 C5M 179.2 180.0
N1 C6 C5 C4 359.2 360.0
C5 C6 N1 H6 180.0 180.0
C1' N1 C2 C6 183.8 180.4
C2 N1 C1' H1' 122.4 58.8
C2 N1 C6 C5 1.5 0.3
C2 N1 C6 H6 181.5 180.3
C4 N3 C2 N1 0.7 0.6
N3 C2 N1 O2 179.5 179.7
N1 C2 N3 HN3 180.7 180.3
C5 C6 N1 C2 1.5 0.3
N1 C6 C5 H6 180.0 180.0
C5M C5 C6 C4 179.9 180.0
C6 C5 C5M H5M 234.1 90.0
C6 C5 C5M H5MA 354.1 210.0
C6 C5 C5M H5MB 114.1 330.0
C6 C5 C4 O4 179.9 180.0
C6 C5 C4 N3 360.0 0.0
C6 C5 C5M C4 180.1 180.0
C5M C5 C6 H6 359.2 0.0
C5M C5 C4 O4 0.0 360.0
C5M C5 C4 N3 180.1 180.0
H5M C5M C5 H5MA 240.1 240.0
H5M C5M C5 H5MB 120.0 119.9
H5MA C5M C5 H5MB 240.0 240.0
C6 C5 C4 C5M 179.9 180.0
C4 C5 C6 H6 179.2 180.0
C4 C5 C5M H5M 54.0 270.0
C4 C5 C5M H5MA 174.0 30.0
C4 C5 C5M H5MB 294.0 150.1
O4 C4 C5 N3 180.0 180.0
C5 C4 N3 C2 0.0 359.7
C5 C4 N3 HN3 180.0 180.0
C5 C4 O4 N3 180.0 180.0
O4 C4 N3 C2 180.1 179.7
O4 C4 N3 HN3 0.1 0.0
N1 C2 N3 C4 0.7 0.6
C5 C4 N3 O4 180.0 180.0
C4 N3 C2 O2 180.2 180.3
C2 N3 C4 HN3 180.0 179.7
N1 C2 N3 O2 180.5 180.3
C4 N3 C2 HN3 180.0 180.3
N1 C2 O2 N3 179.5 179.7
O2 C2 N3 HN3 0.2 360.0
C22 C21 H21 N25 243.6 242.4
H21 C21 C22 C23 136.8 120.6
C22 C21 H21 H21A 121.8 121.2
H21 C21 C22 H22 256.8 239.5
H21 C21 C22 H22A 15.1 1.7
H21 C21 N25 C24 203.2 215.3
H21 C21 N25 C5' 85.9 94.8
N25 C21 H21 H21A 238.2 238.8
C22 C21 H21A N25 117.6 117.6
H21A C21 C22 C23 255.1 241.9
C22 C21 H21A H21 238.8 238.7
H21A C21 C22 H22 15.1 0.9
H21A C21 C22 H22A 133.4 123.0
H21A C21 N25 C24 84.9 94.0
H21A C21 N25 C5' 327.5 333.5
N25 C21 H21A H21 121.2 121.2
H22 C22 C21 N25 136.8 120.2
C21 C22 H22 C23 243.6 244.2
H22 C22 C21 H21 256.8 239.5
H22 C22 C21 H21A 15.1 0.9
C21 C22 H22 H22A 121.8 122.1
H22 C22 C23 C24 248.5 263.0
C23 C22 H22 H22A 238.2 237.9
H22 C22 C23 H23 8.5 21.3
H22 C22 C23 H23A 126.6 144.7
H22A C22 C21 N25 255.1 242.3
C21 C22 H22A C23 117.6 115.8
H22A C22 C21 H21 15.1 1.7
H22A C22 C21 H21A 133.4 123.0
C21 C22 H22A H22 238.8 237.9
H22A C22 C23 C24 130.2 140.9
C23 C22 H22A H22 121.2 122.1
H22A C22 C23 H23 250.2 259.2
H22A C22 C23 H23A 8.3 22.6
C22 C23 H23 C24 244.0 246.5
H23 C23 C22 H22 8.5 21.3
H23 C23 C22 H22A 250.2 259.2
C22 C23 H23 H23A 122.0 123.3
H23 C23 C24 N25 209.2 204.2
C24 C23 H23 H23A 238.0 236.7
H23 C23 C24 H24 329.2 322.7
H23 C23 C24 H24A 87.1 85.8
C22 C23 H23A C24 117.4 113.5
H23A C23 C22 H22 126.6 144.7
H23A C23 C22 H22A 8.3 22.6
C22 C23 H23A H23 238.7 236.7
H23A C23 C24 N25 91.0 80.9
C24 C23 H23A H23 121.3 123.2
H23A C23 C24 H24 211.0 199.4
H23A C23 C24 H24A 328.9 322.5
C23 C24 H24 N25 244.7 246.2
H24 C24 C23 H23 329.2 322.7
H24 C24 C23 H23A 211.0 199.4
C23 C24 H24 H24A 122.4 123.1
H24 C24 N25 C5' 39.0 41.3
N25 C24 H24 H24A 237.7 236.9
C23 C24 H24A N25 116.9 113.8
H24A C24 C23 H23 87.1 85.8
H24A C24 C23 H23A 328.9 322.5
C23 C24 H24A H24 238.4 236.9
H24A C24 N25 C5' 281.1 278.1
N25 C24 H24A H24 121.5 123.1
N25 C5' H5' C4' 242.2 240.0
N25 C5' H5' H5'A 121.1 120.0
H5' C5' C4' O4' 122.3 178.6
H5' C5' C4' C3' 2.3 63.2
C4' C5' H5' H5'A 238.9 240.0
H5' C5' C4' H4' 241.4 300.8
N25 C5' H5'A C4' 118.5 120.1
N25 C5' H5'A H5' 239.3 240.1
H5'A C5' C4' O4' 3.3 58.5
H5'A C5' C4' C3' 243.3 303.2
C4' C5' H5'A H5' 120.7 120.0
H5'A C5' C4' H4' 122.5 180.8
C5' C4' H4' O4' 237.1 237.8
C5' C4' H4' C3' 121.5 122.4
H4' C4' C5' H5' 241.4 300.8
H4' C4' C5' H5'A 122.5 180.8
O4' C4' H4' C3' 244.4 244.6
H4' C4' O4' C1' 68.9 78.4
H4' C4' C3' O3' 17.2 23.8
H4' C4' C3' C2' 261.5 265.1
H4' C4' C3' H3' 138.4 146.3
C4' C3' H3' O3' 239.7 237.5
C4' C3' H3' C2' 117.5 114.8
H3' C3' C4' H4' 138.4 146.3
O3' C3' H3' C2' 237.8 237.3
H3' C3' O3' HO3' 285.1 57.5
H3' C3' C2' C1' 141.9 118.7
H3' C3' C2' H2' 261.9 237.4
H3' C3' C2' H2'A 17.5 0.1
HO3' O3' C3' C2' 161.1 294.7
HO3' O3' C3' H3' 285.1 57.5
C3' C2' H2' C1' 251.1 245.4
H2' C2' C3' H3' 261.9 237.4
C3' C2' H2' H2'A 125.6 122.7
H2' C2' C1' N1 46.6 98.6
C1' C2' H2' H2'A 234.5 237.3
H2' C2' C1' H1' 312.9 336.2
C3' C2' H2'A C1' 112.7 114.6
H2'A C2' C3' H3' 17.5 0.1
C3' C2' H2'A H2' 236.3 237.3
H2'A C2' C1' N1 290.9 335.8
C1' C2' H2'A H2' 123.6 122.7
H2'A C2' C1' H1' 197.3 213.5
O4' C1' H1' C2' 114.4 115.4
O4' C1' H1' N1 240.7 237.7
C2' C1' H1' N1 126.3 122.3
H1' C1' C2' H2' 312.9 336.2
H1' C1' C2' H2'A 197.3 213.5
H1' C1' N1 C6 306.0 239.2
H1' C1' N1 C2 122.4 58.8
H6 C6 N1 C2 181.5 180.3
N1 C6 H6 C5 180.0 180.0
H6 C6 C5 C5M 359.2 0.0
H6 C6 C5 C4 179.2 180.0
H5M C5M C5 C4 54.0 270.0
C5 C5M H5M H5MA 120.0 120.0
C5 C5M H5M H5MB 240.0 240.0
H5MA C5M H5M H5MB 120.0 120.0
H5MA C5M C5 C4 174.0 30.0
C5 C5M H5MA H5M 240.0 240.0
C5 C5M H5MA H5MB 120.0 120.0
H5M C5M H5MA H5MB 240.0 240.0
H5MB C5M C5 C4 294.0 150.1
C5 C5M H5MB H5M 120.0 120.0
C5 C5M H5MB H5MA 240.0 239.9
H5M C5M H5MB H5MA 120.0 120.0
C4 N3 HN3 C2 180.0 179.7
HN3 N3 C2 O2 0.2 360.0