PDB Chemical Component TNR (obsoleted)

Ideal Model

Chemical Description

Name O-(2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSYL)-L-SERINE
Formula C11 H20 N2 O8
Formal charge 0
Molecular weight 308.285 g/mol
Component type L-PEPTIDE LINKING
Nonstandard Parent Id SER

Chemical features

Atom count 41
Chiral atom count 6
Chiral atoms CA C1 C2 C3 C4 C5
Observed leaving atoms OXT H2
Bond count 41
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) (2S)-3-{[(2S,3R,4R,5R,6R)-3-(acetylamino)-4,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}-2-aminopropanoic acid (non-preferred name)
Systematic name (OpenEye OEToolkits) (2S)-3-[(2S,3R,4R,5R,6R)-3-acetamido-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-2-amino-propanoic acid

Chemical Descriptors

Stereo SMILES (CACTVS) CC(=O)N[C@@H]1[C@@H](O)[C@@H](O)[C@@H](CO)O[C@@H]1OC[C@H](N)C(O)=O
SMILES (CACTVS) CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1OC[CH](N)C(O)=O
Stereo SMILES (OpenEye) CC(=O)N[C@@H]1[C@H]([C@H]([C@H](O[C@@H]1OC[C@@H](C(=O)O)N)CO)O)O
InChI descriptor InChI=1S/C11H20N2O8/c1-4(15)13-7-9(17)8(16)6(2-14)21-11(7)20-3-5(12)10(18)19/h5-9,11,14,16-17H,2-3,12H2,1H3,(H,13,15)(H,18,19)/t5-,6+,7+,8-,9+,11-/m0/s1
InChIKey descriptor REDMNGDGDYFZRE-WKWISIMFSA-N

Status Information

Last modified 2020-07-03
Created 2002-11-15
Release status OBS
Model PDB code 1N47
Processing site EBI