PDB Chemical Component TFE

Ideal Model

Chemical Description

Name 2'-O-[2-(TRIFLUORO)ETHYL] THYMIDINE-5'-MONOPHOSPHATE
Formula C12 H16 F3 N2 O9 P
Formal charge 0
Molecular weight 420.232 g/mol
Component type RNA LINKING
Nonstandard Parent Id DT

Chemical features

Atom count 43
Chiral atom count 4
Chiral atoms C4' C1' C2' C3'
Observed leaving atoms OP3 HO3'
Bond count 44
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5-methyl-2'-O-(2,2,2-trifluoroethyl)uridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3R,4R,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)-4-(2,2,2-trifluoroethoxy)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2OCC(F)(F)F)C(=O)NC1=O
SMILES (CACTVS) CC1=CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2OCC(F)(F)F)C(=O)NC1=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)OCC(F)(F)F
InChI descriptor InChI=1S/C12H16F3N2O9P/c1-5-2-17(11(20)16-9(5)19)10-8(24-4-12(13,14)15)7(18)6(26-10)3-25-27(21,22)23/h2,6-8,10,18H,3-4H2,1H3,(H,16,19,20)(H2,21,22,23)/t6-,7-,8-,10-/m1/s1
InChIKey descriptor YTGJEPUSXBDJRJ-FDDDBJFASA-N

Status Information

Last modified 2011-06-04
Created 2004-12-17
Release status REL
Model PDB code 1Y8L
Processing site PDBJ