PDB Chemical Component TFE

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TFE

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.493 1.501
P OP2 1.476 1.617
P O5' 1.584 1.619
P OP3   1.618
OP2 HOP2 0.951 0.980
O5' C5' 1.426 1.416
C5' C4' 1.493 1.523
C5' H5' 1.115 1.092
C5' H5'' 1.115 1.091
C4' O4' 1.453 1.444
C4' C3' 1.519 1.523
C4' H4' 1.115 1.095
O4' C1' 1.418 1.437
C1' N1 1.476 1.435
C1' C2' 1.527 1.519
C1' H1' 1.115 1.094
N1 C6 1.380 1.390
N1 C2 1.371 1.413
C6 C5 1.333 1.339
C6 H6 1.103 1.086
C2 O2 1.219 1.232
C2 N3 1.368 1.400
N3 C4 1.380 1.386
N3 HN3 1.020 1.017
C4 O4 1.219 1.229
C4 C5 1.458 1.487
C5 C5M 1.497 1.495
C5M H71 1.114 1.089
C5M H72 1.115 1.089
C5M H73 1.115 1.090
C2' O2' 1.424 1.413
C2' C3' 1.519 1.514
C2' H2' 1.115 1.097
O2' CB' 1.416 1.424
CB' CC' 1.466 1.506
CB' HB'1 1.115 1.094
CB' HB'2 1.115 1.094
CC' FD' 1.319 1.351
CC' FE' 1.321 1.349
CC' FF' 1.324 1.350
C3' O3' 1.420 1.427
C3' H3' 1.115 1.093
O3' HO3' 0.950 0.969
OP3 HOP3   0.980

Bond Angles for TFE

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 119.1 115.3
OP1 P O5' 108.2 115.0
OP1 P OP3   114.9
OP2 P O5' 109.9 103.8
OP2 P OP3   103.3
P OP2 HOP2 119.1 119.0
O5' P OP3   102.9
P O5' C5' 119.7 118.5
P OP3 HOP3   119.0
O5' C5' C4' 109.8 108.6
O5' C5' H5' 112.1 109.2
O5' C5' H5'' 112.1 109.3
C4' C5' H5' 112.1 110.1
C4' C5' H5'' 112.1 110.1
C5' C4' O4' 110.2 108.2
C5' C4' C3' 115.3 113.3
C5' C4' H4' 103.2 109.3
H5' C5' H5'' 98.3 109.6
O4' C4' C3' 103.6 105.9
O4' C4' H4' 115.0 107.7
C4' O4' C1' 109.0 109.2
C3' C4' H4' 109.9 112.2
C4' C3' C2' 102.1 102.1
C4' C3' O3' 113.1 107.9
C4' C3' H3' 113.5 114.5
O4' C1' N1 109.2 109.0
O4' C1' C2' 107.9 106.5
O4' C1' H1' 110.7 108.9
N1 C1' C2' 109.7 112.5
N1 C1' H1' 109.0 107.3
C1' N1 C6 123.1 118.5
C1' N1 C2 115.3 121.3
C2' C1' H1' 110.3 112.6
C1' C2' O2' 109.6 112.6
C1' C2' C3' 100.8 102.0
C1' C2' H2' 113.7 111.1
C6 N1 C2 121.6 120.2
N1 C6 C5 123.3 124.5
N1 C6 H6 120.2 114.7
N1 C2 O2 122.2 123.8
N1 C2 N3 114.9 115.1
C5 C6 H6 116.5 120.7
C6 C5 C4 117.9 118.4
C6 C5 C5M 122.8 123.6
O2 C2 N3 122.8 121.1
C2 N3 C4 126.8 127.0
C2 N3 HN3 116.1 116.4
C4 N3 HN3 117.1 116.6
N3 C4 O4 119.7 123.6
N3 C4 C5 115.4 114.8
O4 C4 C5 124.9 121.6
C4 C5 C5M 119.3 118.0
C5 C5M H71 107.5 109.7
C5 C5M H72 122.8 109.8
C5 C5M H73 107.5 109.7
H71 C5M H72 107.5 109.4
H71 C5M H73 102.3 109.4
H72 C5M H73 107.5 108.9
O2' C2' C3' 105.8 112.3
O2' C2' H2' 109.3 108.6
C2' O2' CB' 116.1 111.9
C3' C2' H2' 117.1 110.1
C2' C3' O3' 113.6 110.3
C2' C3' H3' 113.0 114.0
O2' CB' CC' 107.8 109.1
O2' CB' HB'1 112.8 108.7
O2' CB' HB'2 112.8 108.7
CC' CB' HB'1 112.8 110.6
CC' CB' HB'2 112.8 110.6
CB' CC' FD' 109.6 110.6
CB' CC' FE' 111.2 111.3
CB' CC' FF' 112.7 111.3
HB'1 CB' HB'2 97.6 109.1
FD' CC' FE' 108.1 107.7
FD' CC' FF' 109.2 107.6
FE' CC' FF' 105.9 108.1
O3' C3' H3' 102.0 107.8
C3' O3' HO3' 113.1 106.4

Torsion Angles for TFE

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 O5' 233.7 120.7
OP2 P OP1 OP3   240.0
OP1 P OP2 HOP2 180.0 48.7
O5' P OP1 OP3   119.3
OP1 P O5' C5' 48.2 180.1
OP1 P OP3 HOP3   312.0
OP1 P OP2 O5' 125.5 233.4
OP1 P OP2 OP3   126.2
O5' P OP2 OP3   252.9
OP2 P O5' C5' 179.7 53.2
OP2 P OP3 HOP3   78.5
OP1 P O5' OP2 228.5 126.9
OP1 P O5' OP3   234.2
OP2 P O5' OP3   107.4
O5' P OP2 HOP2 54.5 175.4
O5' P OP3 HOP3   186.2
P O5' C5' C4' 172.3 180.0
P O5' C5' H5' 47.1 300.1
P O5' C5' H5'' 297.6 59.9
OP1 P OP3 OP2   233.5
OP1 P OP3 O5'   125.8
OP2 P OP3 O5'   252.3
OP3 P OP2 HOP2   282.5
OP3 P O5' C5'   305.8
HOP2 OP2 P O5' 54.5 175.4
HOP2 OP2 P OP3   282.5
C5' O5' P OP3   305.8
C4' C5' O5' H5' 125.2 239.9
C4' C5' O5' H5'' 234.7 120.1
O5' C5' C4' O4' 290.8 62.4
O5' C5' C4' C3' 47.7 179.5
O5' C5' C4' H4' 167.5 305.4
H5' C5' O5' H5'' 109.5 240.2
O5' C5' C4' H5' 234.7 119.5
O5' C5' C4' H5'' 125.3 240.4
H5' C5' C4' H5'' 250.5 120.9
O4' C4' C5' C3' 243.1 242.9
O4' C4' C5' H4' 123.3 117.0
C5' C4' O4' C1' 147.2 109.0
C3' C4' C5' H4' 240.2 234.1
C5' C4' C3' C2' 200.9 273.1
C5' C4' C3' O3' 78.4 156.8
C5' C4' C3' H3' 322.8 36.8
O5' C5' H5' C4' 124.0 240.8
O5' C5' H5' H5'' 242.0 119.6
C4' C5' H5' H5'' 118.0 238.8
H5' C5' C4' O4' 56.1 302.9
H5' C5' C4' C3' 173.0 60.0
H5' C5' C4' H4' 292.8 185.9
O5' C5' H5'' C4' 236.0 119.2
O5' C5' H5'' H5' 118.0 240.4
C4' C5' H5'' H5' 242.0 121.2
H5'' C5' C4' O4' 165.6 182.0
H5'' C5' C4' C3' 282.4 299.1
H5'' C5' C4' H4' 42.3 65.0
O4' C4' C5' H5' 56.1 302.9
O4' C4' C5' H5'' 165.6 182.0
C5' C4' O4' C3' 124.0 121.7
C5' C4' O4' H4' 243.9 241.9
C3' C4' O4' H4' 119.9 120.2
O4' C4' C3' C2' 321.5 31.5
O4' C4' C3' O3' 198.9 275.3
O4' C4' C3' H3' 83.4 155.2
C4' O4' C1' N1 242.3 227.1
C4' O4' C1' C2' 1.4 348.7
C4' O4' C1' H1' 122.2 110.3
C3' C4' C5' H5' 173.0 60.0
C3' C4' C5' H5'' 282.4 299.1
C5' C4' C3' O4' 239.4 241.6
C5' C4' C3' H4' 116.1 124.4
O4' C4' C3' H4' 236.7 242.8
C3' C4' O4' C1' 23.3 347.2
C1' C2' C3' C4' 38.1 322.9
O2' C2' C3' C4' 284.0 202.0
C4' C3' C2' H2' 162.0 80.9
C2' C3' C4' O3' 122.5 116.3
C2' C3' C4' H3' 238.1 236.3
O3' C3' C4' H3' 115.5 120.1
C4' C3' O3' HO3' 180.0 15.2
H4' C4' C5' H5' 292.8 185.9
H4' C4' C5' H5'' 42.3 65.0
C5' C4' H4' O4' 120.1 117.3
C5' C4' H4' C3' 236.5 233.5
O4' C4' H4' C3' 116.4 116.2
H4' C4' O4' C1' 263.4 227.0
H4' C4' C3' C2' 84.8 148.7
H4' C4' C3' O3' 322.3 32.5
H4' C4' C3' H3' 206.7 272.4
C1' O4' C4' C3' 23.3 347.2
C1' O4' C4' H4' 263.4 227.0
N1 C1' O4' C2' 240.8 238.4
N1 C1' O4' H1' 120.0 116.8
O4' C1' N1 C6 25.7 32.3
O4' C1' N1 C2 205.1 212.2
C2' C1' O4' H1' 239.2 238.4
O4' C1' C2' O2' 85.9 151.3
O4' C1' C2' C3' 334.7 30.7
O4' C1' C2' H2' 208.6 273.4
O4' C1' N1 C2' 118.1 117.9
O4' C1' N1 H1' 238.9 242.3
C2' C1' N1 H1' 120.8 124.4
N1 C1' C2' O2' 204.8 270.6
N1 C1' C2' C3' 93.6 150.0
N1 C1' C2' H2' 327.5 32.7
C6 N1 C1' C2 180.6 180.1
C1' N1 C6 C5 180.0 180.0
C1' N1 C6 H6 359.9 360.0
C1' N1 C2 O2 356.2 0.1
C1' N1 C2 N3 178.1 180.0
C4' C3' C2' C1' 38.1 322.9
O4' C1' C2' N1 241.1 240.7
O4' C1' C2' H1' 121.1 119.3
N1 C1' C2' H1' 240.0 238.6
C2' C1' N1 C6 267.7 274.4
C2' C1' N1 C2 87.0 94.3
O2' C2' C1' C3' 111.2 120.6
O2' C2' C1' H2' 237.3 237.9
C1' C2' O2' CB' 63.8 185.5
C3' C2' C1' H2' 126.1 117.3
C1' C2' C3' O3' 160.3 77.4
C1' C2' C3' H3' 275.9 198.9
O4' C1' H1' N1 120.2 117.8
O4' C1' H1' C2' 240.6 242.1
N1 C1' H1' C2' 120.5 124.3
H1' C1' N1 C6 146.8 150.0
H1' C1' N1 C2 326.2 329.9
H1' C1' C2' O2' 324.9 32.1
H1' C1' C2' C3' 213.7 271.5
H1' C1' C2' H2' 87.6 154.2
C6 N1 C1' C2' 267.7 274.4
C6 N1 C1' H1' 146.8 150.0
C1' N1 C6 C2 179.3 179.9
C6 N1 C2 O2 175.6 180.0
C6 N1 C2 N3 357.5 360.0
C5 C6 N1 H6 180.0 180.0
N1 C6 C5 C4 1.1 0.0
N1 C6 C5 C5M 181.2 180.0
C2 N1 C1' C2' 87.0 94.3
C2 N1 C1' H1' 326.2 329.9
C1' N1 C2 C6 180.6 180.1
C2 N1 C6 C5 0.6 0.0
C2 N1 C6 H6 180.6 180.0
O2 C2 N1 N3 178.1 180.1
N1 C2 N3 C4 3.0 360.0
N1 C2 N3 HN3 183.0 180.1
C5 C6 N1 C2 0.6 0.0
N1 C6 C5 H6 180.0 180.0
N3 C4 C5 C6 359.2 360.0
O4 C4 C5 C6 180.0 180.0
C4 C5 C6 C5M 179.9 180.0
C6 C5 C5M H71 54.7 64.2
C6 C5 C5M H72 180.0 304.0
C6 C5 C5M H73 305.3 184.4
H6 C6 N1 C2 180.6 180.0
N1 C6 H6 C5 180.0 180.0
H6 C6 C5 C4 181.1 180.0
H6 C6 C5 C5M 1.2 360.0
N1 C2 O2 N3 182.0 179.9
O2 C2 N3 C4 184.9 179.9
O2 C2 N3 HN3 4.9 0.0
N1 C2 N3 O2 178.1 180.1
C4 N3 C2 HN3 180.0 179.9
C2 N3 C4 O4 178.0 180.1
C2 N3 C4 C5 358.7 0.1
C6 C5 C4 N3 359.2 360.0
C2 N3 C4 HN3 180.0 180.1
O4 C4 N3 C5 179.3 180.0
N3 C4 C5 C5M 179.1 180.0
C2 N3 HN3 C4 180.0 179.9
HN3 N3 C4 O4 357.9 360.0
HN3 N3 C4 C5 178.7 180.0
C6 C5 C4 O4 180.0 180.0
O4 C4 N3 HN3 357.9 360.0
N3 C4 O4 C5 180.8 180.0
O4 C4 C5 C5M 359.9 360.0
C4 C5 C6 H6 181.1 180.0
C6 C5 C4 C5M 180.1 180.0
C5 C4 N3 HN3 178.7 180.0
N3 C4 C5 O4 179.3 180.0
C4 C5 C5M H71 234.8 244.2
C4 C5 C5M H72 0.1 124.0
C4 C5 C5M H73 125.4 4.4
C5M C5 C6 H6 1.2 360.0
C6 C5 C5M C4 179.9 180.0
H71 C5M C5 H72 234.7 120.2
H71 C5M C5 H73 109.5 239.8
H72 C5M C5 H73 234.7 119.6
C5 C5M H71 H72 134.0 239.5
C5 C5M H71 H73 247.0 120.4
H72 C5M H71 H73 113.0 240.8
C5 C5M H72 H71 234.7 120.4
C5 C5M H72 H73 125.2 239.9
H71 C5M H72 H73 250.5 119.5
C5 C5M H73 H71 113.0 239.6
C5 C5M H73 H72 226.0 120.2
H71 C5M H73 H72 113.0 240.5
C4' C3' C2' O2' 284.0 202.0
O2' C2' C1' H1' 324.9 32.1
C1' C2' O2' C3' 252.1 245.5
C1' C2' O2' H2' 125.2 123.5
C3' C2' O2' H2' 233.1 238.0
O2' C2' C3' O3' 46.2 316.5
O2' C2' C3' H3' 161.8 78.0
C2' O2' CB' CC' 173.3 180.6
C2' O2' CB' HB'1 48.0 60.0
C2' O2' CB' HB'2 298.6 301.4
C2' C3' C4' H4' 84.8 148.7
C4' C3' C2' O3' 237.8 245.5
C4' C3' C2' H3' 122.3 124.0
C3' C2' C1' H1' 213.7 271.5
C1' C2' C3' O2' 114.1 120.8
C1' C2' C3' H2' 236.2 242.0
O2' C2' C3' H2' 122.1 121.1
C3' C2' O2' CB' 171.7 300.0
O3' C3' C2' H3' 244.5 238.5
C2' C3' O3' HO3' 64.1 264.4
H2' C2' C1' H1' 87.6 154.2
C1' C2' H2' O2' 237.2 235.6
C1' C2' H2' C3' 117.0 112.3
O2' C2' H2' C3' 239.8 236.7
H2' C2' O2' CB' 298.6 62.0
H2' C2' C3' O3' 284.2 195.4
H2' C2' C3' H3' 39.7 316.9
CB' O2' C2' C3' 171.7 300.0
CB' O2' C2' H2' 298.6 62.0
CC' CB' O2' HB'1 125.3 120.7
CC' CB' O2' HB'2 234.7 239.3
O2' CB' CC' FD' 186.4 300.5
O2' CB' CC' FE' 305.9 180.7
O2' CB' CC' FF' 64.6 60.1
HB'1 CB' O2' HB'2 109.5 118.6
O2' CB' CC' HB'1 234.7 240.5
O2' CB' CC' HB'2 125.3 119.6
HB'1 CB' CC' HB'2 250.6 239.1
FD' CC' CB' FE' 240.5 119.7
FD' CC' CB' FF' 121.8 240.4
FE' CC' CB' FF' 241.3 120.6
O2' CB' HB'1 CC' 122.5 119.7
O2' CB' HB'1 HB'2 241.2 241.6
CC' CB' HB'1 HB'2 118.7 121.9
HB'1 CB' CC' FD' 311.7 60.0
HB'1 CB' CC' FE' 71.1 300.3
HB'1 CB' CC' FF' 189.9 179.6
O2' CB' HB'2 CC' 237.5 240.2
O2' CB' HB'2 HB'1 118.8 118.4
CC' CB' HB'2 HB'1 241.3 238.2
HB'2 CB' CC' FD' 61.1 180.9
HB'2 CB' CC' FE' 180.6 61.2
HB'2 CB' CC' FF' 299.3 300.5
FD' CC' CB' HB'1 311.7 60.0
FD' CC' CB' HB'2 61.1 180.9
CB' CC' FD' FE' 121.4 238.1
CB' CC' FD' FF' 236.1 121.8
FE' CC' FD' FF' 114.7 243.7
FE' CC' CB' HB'1 71.1 300.3
FE' CC' CB' HB'2 180.6 61.2
CB' CC' FE' FD' 239.7 121.5
CB' CC' FE' FF' 122.8 237.5
FD' CC' FE' FF' 243.1 116.1
FF' CC' CB' HB'1 189.9 179.6
FF' CC' CB' HB'2 299.3 300.5
CB' CC' FF' FD' 122.0 238.6
CB' CC' FF' FE' 238.2 122.5
FD' CC' FF' FE' 116.2 243.9
O3' C3' C4' H4' 322.3 32.5
C4' C3' O3' C2' 115.9 110.7
C4' C3' O3' H3' 237.8 235.8
O3' C3' C2' H2' 284.2 195.4
C2' C3' O3' H3' 121.9 125.1
H3' C3' C4' H4' 206.7 272.4
C4' C3' H3' C2' 244.3 243.0
C4' C3' H3' O3' 122.0 120.1
H3' C3' C2' H2' 39.7 316.9
C2' C3' H3' O3' 237.7 237.2
H3' C3' O3' HO3' 302.3 139.4
HO3' O3' C3' H3' 302.3 139.4