PDB Chemical Component TAF

Ideal Model

Chemical Description

Name 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE-5'-PHOSPHATE
Formula C10 H14 F N2 O8 P
Formal charge 0
Molecular weight 340.199 g/mol
Component type DNA LINKING
Nonstandard Parent Id DT

Chemical features

Atom count 36
Chiral atom count 4
Chiral atoms C2' C4' C1' C3'
Observed leaving atoms OP3
Bond count 37
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-5-methylpyrimidine-2,4(1H,3H)-dione
Systematic name (OpenEye OEToolkits) [(2R,3R,4S,5R)-4-fluoro-3-hydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]2F)C(=O)NC1=O
SMILES (CACTVS) CC1=CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2F)C(=O)NC1=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2[C@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)F
InChI descriptor InChI=1S/C10H14FN2O8P/c1-4-2-13(10(16)12-8(4)15)9-6(11)7(14)5(21-9)3-20-22(17,18)19/h2,5-7,9,14H,3H2,1H3,(H,12,15,16)(H2,17,18,19)/t5-,6+,7-,9-/m1/s1
InChIKey descriptor XJQFIHYTCPKUTK-JVZYCSMKSA-N

Status Information

Last modified 2011-06-04
Created 1999-07-08
Release status REL
Model PDB code 1DPN
Processing site RCSB