PDB Chemical Component TAF

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TAF

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.507 1.610
P OP2 1.466 1.609
P OP3 1.612 1.479
P O5' 1.607 1.610
OP1 HOP1 0.951 0.967
OP2 HOP2 0.951 0.966
O5' C5' 1.450 1.428
N1 C6 1.380 1.368
N1 C2 1.379 1.344
N1 C1' 1.488 1.465
C6 C5 1.340 1.350
C6 H6 1.102 1.080
C2 O2 1.208 1.216
C2 N3 1.365 1.346
N3 C4 1.372 1.349
N3 H3 1.020 0.970
C4 O4 1.217 1.218
C4 C5 1.443 1.415
C5 C5M 1.504 1.507
C5M H71 1.116 1.091
C5M H72 1.115 1.090
C5M H73 1.114 1.090
F2' C2' 1.350 1.399
C2' C1' 1.424 1.544
C2' C3' 1.504 1.546
C2' H2' 1.115 1.089
C5' C4' 1.508 1.530
C5' H5' 1.115 1.090
C5' H5'' 1.115 1.090
C4' O4' 1.426 1.444
C4' C3' 1.536 1.544
C4' H4' 1.116 1.090
O4' C1' 1.540 1.443
C1' H1' 1.115 1.090
C3' O3' 1.421 1.429
C3' H3' 1.114 1.090
O3' HO'3 0.950 0.967

Bond Angles for TAF

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 121.3 109.4
OP1 P OP3 105.2 109.5
OP1 P O5' 110.2 109.5
P OP1 HOP1 121.3 106.8
OP2 P OP3 109.9 109.5
OP2 P O5' 105.3 109.5
P OP2 HOP2 121.3 106.9
OP3 P O5' 103.6 109.5
P O5' C5' 116.9 106.8
O5' C5' C4' 106.6 109.5
O5' C5' H5' 113.3 109.5
O5' C5' H5'' 113.3 109.5
C6 N1 C2 120.7 120.6
C6 N1 C1' 122.7 119.7
N1 C6 C5 124.1 119.7
N1 C6 H6 119.5 120.2
C2 N1 C1' 116.5 119.7
N1 C2 O2 123.5 119.5
N1 C2 N3 114.5 120.9
N1 C1' C2' 121.4 110.4
N1 C1' O4' 101.5 110.3
N1 C1' H1' 106.4 110.3
C5 C6 H6 116.4 120.2
C6 C5 C4 117.4 119.1
C6 C5 C5M 124.6 120.4
O2 C2 N3 122.0 119.5
C2 N3 C4 127.8 120.2
C2 N3 H3 115.8 120.0
C4 N3 H3 116.4 119.8
N3 C4 O4 118.9 120.3
N3 C4 C5 115.3 119.4
O4 C4 C5 125.7 120.3
C4 C5 C5M 117.9 120.4
C5 C5M H71 124.6 109.5
C5 C5M H72 106.8 109.5
C5 C5M H73 106.9 109.4
H71 C5M H72 106.8 109.4
H71 C5M H73 106.9 109.5
H72 C5M H73 102.8 109.5
F2' C2' C1' 107.8 110.6
F2' C2' C3' 111.7 110.5
F2' C2' H2' 107.7 110.4
C1' C2' C3' 104.6 103.9
C1' C2' H2' 114.4 110.7
C2' C1' O4' 106.7 104.9
C2' C1' H1' 101.1 110.3
C3' C2' H2' 110.7 110.5
C2' C3' C4' 105.9 104.1
C2' C3' O3' 114.2 110.6
C2' C3' H3' 108.0 110.6
C4' C5' H5' 113.3 109.5
C4' C5' H5'' 113.3 109.5
C5' C4' O4' 107.2 110.4
C5' C4' C3' 116.4 110.5
C5' C4' H4' 105.2 110.3
H5' C5' H5'' 97.2 109.5
O4' C4' C3' 105.6 104.8
O4' C4' H4' 116.0 110.4
C4' O4' C1' 101.0 105.2
C3' C4' H4' 106.8 110.3
C4' C3' O3' 107.0 110.6
C4' C3' H3' 115.1 110.5
O4' C1' H1' 121.2 110.4
O3' C3' H3' 106.9 110.4
C3' O3' HO'3 114.2 106.9

Torsion Angles for TAF

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 125.4 120.0
OP2 P OP1 O5' 236.5 240.0
OP1 P OP2 HOP2 180.0 60.0
OP3 P OP1 O5' 111.1 120.0
OP1 P O5' C5' 56.6 180.0
OP1 P OP2 OP3 236.8 240.0
OP1 P OP2 O5' 125.8 120.0
OP2 P OP1 HOP1 180.0 60.0
OP3 P OP2 O5' 249.0 240.0
OP2 P O5' C5' 189.0 299.9
OP1 P OP3 OP2 132.2 120.0
OP1 P OP3 O5' 244.3 240.0
OP3 P OP1 HOP1 54.6 300.0
OP2 P OP3 O5' 112.1 120.0
OP3 P OP2 HOP2 303.2 180.0
OP3 P O5' C5' 304.4 60.0
OP1 P O5' OP2 227.6 240.1
OP1 P O5' OP3 112.1 120.0
O5' P OP1 HOP1 303.5 180.0
OP2 P O5' OP3 244.5 239.9
O5' P OP2 HOP2 54.2 300.1
P O5' C5' C4' 169.5 180.0
P O5' C5' H5' 294.8 60.0
P O5' C5' H5'' 44.3 300.0
HOP1 OP1 P OP2 180.0 60.0
HOP1 OP1 P OP3 54.6 300.0
HOP1 OP1 P O5' 303.5 180.0
HOP2 OP2 P OP3 303.2 180.0
HOP2 OP2 P O5' 54.2 300.1
C4' C5' O5' H5' 234.7 120.1
C4' C5' O5' H5'' 125.2 240.0
O5' C5' C4' O4' 295.5 61.4
O5' C5' C4' C3' 53.3 176.9
O5' C5' C4' H4' 171.4 299.2
H5' C5' O5' H5'' 250.5 120.0
C2 N1 C6 C1' 183.4 180.0
C6 N1 C2 O2 179.4 180.1
C6 N1 C2 N3 357.4 360.0
C6 N1 C1' C2' 291.5 121.5
C6 N1 C1' O4' 49.4 237.0
C6 N1 C1' H1' 176.9 359.3
C5 C6 N1 H6 180.0 179.8
N1 C6 C5 C4 2.1 0.3
N1 C6 C5 C5M 180.0 180.0
C6 N1 C2 C1' 176.8 180.0
C2 N1 C6 C5 1.5 359.9
C2 N1 C6 H6 181.4 180.1
C2 N1 C1' C2' 108.2 301.5
C2 N1 C1' O4' 226.1 57.0
C2 N1 C1' H1' 353.7 179.3
O2 C2 N1 N3 182.0 180.1
N1 C2 N3 C4 0.2 359.9
N1 C2 N3 H3 180.2 180.0
C6 N1 C1' C2 183.2 180.0
C1' N1 C6 C5 178.1 179.9
C1' N1 C6 H6 358.0 0.1
C1' N1 C2 O2 2.6 0.1
C1' N1 C2 N3 180.6 180.0
F2' C2' C1' N1 25.0 24.2
N1 C1' C2' C3' 144.1 142.8
N1 C1' C2' H2' 265.3 261.4
C2' C1' N1 O4' 242.1 244.5
C2' C1' N1 H1' 114.5 122.2
C4' O4' C1' N1 190.8 200.6
O4' C1' N1 H1' 232.4 237.7
C5 C6 N1 C2 1.5 359.9
C5 C6 N1 C1' 178.1 179.9
N1 C6 C5 H6 180.0 180.2
N3 C4 C5 C6 355.8 359.5
O4 C4 C5 C6 178.2 179.9
C4 C5 C6 C5M 182.2 180.4
C6 C5 C5M H71 180.0 180.1
C6 C5 C5M H72 305.2 300.1
C6 C5 C5M H73 54.7 60.1
H6 C6 N1 C2 181.4 180.1
H6 C6 N1 C1' 358.0 0.1
N1 C6 H6 C5 180.0 179.8
H6 C6 C5 C4 182.2 180.2
H6 C6 C5 C5M 360.0 359.8
O2 C2 N1 C1' 2.6 0.1
N1 C2 O2 N3 177.8 179.9
O2 C2 N3 C4 178.2 179.8
O2 C2 N3 H3 358.3 359.9
N3 C2 N1 C1' 180.6 180.0
N1 C2 N3 O2 182.0 180.1
C4 N3 C2 H3 180.0 179.9
C2 N3 C4 O4 181.0 180.0
C2 N3 C4 C5 3.2 0.4
C6 C5 C4 N3 355.8 359.5
C2 N3 C4 H3 180.0 180.1
O4 C4 N3 C5 177.8 179.6
N3 C4 C5 C5M 177.8 179.9
C2 N3 H3 C4 180.0 179.9
H3 N3 C4 O4 0.9 359.8
H3 N3 C4 C5 183.2 180.2
C6 C5 C4 O4 178.2 179.9
O4 C4 N3 H3 0.9 359.8
N3 C4 O4 C5 182.5 180.4
O4 C4 C5 C5M 0.2 0.3
C4 C5 C6 H6 182.2 180.2
C6 C5 C4 C5M 178.0 179.6
C5 C4 N3 H3 183.2 180.2
N3 C4 C5 O4 177.6 179.6
C4 C5 C5M H71 357.9 359.7
C4 C5 C5M H72 123.0 119.7
C4 C5 C5M H73 232.5 239.7
C5M C5 C6 H6 360.0 359.8
C6 C5 C5M C4 182.2 180.4
H71 C5M C5 H72 234.8 240.0
H71 C5M C5 H73 125.3 120.0
H72 C5M C5 H73 250.5 240.0
C5 C5M H71 H72 125.2 120.1
C5 C5M H71 H73 234.7 240.0
H72 C5M H71 H73 109.5 120.0
C5 C5M H72 H71 224.6 240.0
C5 C5M H72 H73 112.3 120.0
H71 C5M H72 H73 247.7 240.0
C5 C5M H73 H71 135.4 120.0
C5 C5M H73 H72 247.7 239.9
H71 C5M H73 H72 112.3 119.9
N1 C1' C2' F2' 25.0 24.2
C1' C2' F2' C3' 114.4 114.5
C1' C2' F2' H2' 236.1 237.1
F2' C2' C1' O4' 269.8 265.3
F2' C2' C1' H1' 142.2 146.4
C3' C2' F2' H2' 121.8 122.5
F2' C2' C3' C4' 109.5 118.8
F2' C2' C3' O3' 226.9 237.5
F2' C2' C3' H3' 345.7 0.1
N1 C1' C2' O4' 115.3 118.9
N1 C1' C2' H1' 242.8 237.8
F2' C2' C1' C3' 241.0 241.4
F2' C2' C1' H2' 119.7 122.8
C3' C2' C1' H2' 238.7 241.4
C1' C2' C3' C4' 353.2 0.1
C1' C2' C3' O3' 110.6 118.9
C1' C2' C3' H3' 229.4 241.5
C4' O4' C1' C2' 318.8 319.5
O4' C1' C2' H1' 127.6 118.9
F2' C2' C3' C1' 116.3 118.6
F2' C2' C3' H2' 240.0 237.5
C1' C2' C3' H2' 123.7 118.8
C3' C2' C1' O4' 28.8 23.9
C3' C2' C1' H1' 261.2 265.0
C5' C4' C3' C2' 222.0 217.0
O4' C4' C3' C2' 340.7 335.9
C2' C3' C4' H4' 104.8 94.8
C4' C3' C2' O3' 242.6 241.3
C4' C3' C2' H3' 123.8 118.6
O3' C3' C2' H3' 241.2 237.4
C2' C3' O3' HO'3 180.0 65.2
F2' C2' H2' C1' 240.2 237.2
F2' C2' H2' C3' 122.4 122.6
C1' C2' H2' C3' 242.2 245.4
H2' C2' C1' O4' 150.1 142.5
H2' C2' C1' H1' 22.5 23.6
H2' C2' C3' C4' 229.5 241.3
H2' C2' C3' O3' 346.9 0.0
H2' C2' C3' H3' 105.7 122.6
O5' C5' C4' H5' 125.3 240.0
O5' C5' C4' H5'' 234.7 120.0
C2' C3' C4' C5' 222.0 217.0
H5' C5' C4' H5'' 109.4 240.0
O4' C4' C5' C3' 242.1 244.5
O4' C4' C5' H4' 124.1 122.3
C5' C4' O4' C1' 159.8 159.5
C3' C4' C5' H4' 241.9 237.7
C5' C4' C3' O3' 99.8 98.3
C5' C4' C3' H3' 341.2 335.7
O5' C5' H5' C4' 238.4 120.1
O5' C5' H5' H5'' 119.2 240.0
C4' C5' H5' H5'' 240.8 120.0
H5' C5' C4' O4' 170.2 181.5
H5' C5' C4' C3' 288.0 296.9
H5' C5' C4' H4' 46.1 59.2
O5' C5' H5'' C4' 121.6 240.0
O5' C5' H5'' H5' 240.7 120.0
C4' C5' H5'' H5' 119.2 240.0
H5'' C5' C4' O4' 60.7 301.5
H5'' C5' C4' C3' 178.6 56.9
H5'' C5' C4' H4' 296.7 179.2
N1 C1' O4' C4' 190.8 200.6
C2' C1' O4' C4' 318.8 319.5
C2' C3' C4' O4' 340.7 335.9
O4' C4' C5' H5' 170.2 181.5
O4' C4' C5' H5'' 60.7 301.5
C5' C4' O4' C3' 124.7 119.0
C5' C4' O4' H4' 242.8 237.8
C3' C4' O4' H4' 118.1 118.8
O4' C4' C3' O3' 218.5 217.2
O4' C4' C3' H3' 99.9 94.7
C4' O4' C1' H1' 73.5 78.4
C4' C3' C2' H2' 229.5 241.3
C2' C3' C4' O3' 122.2 118.7
C2' C3' C4' H3' 240.8 241.3
C3' C4' C5' H5' 288.0 296.9
C3' C4' C5' H5'' 178.6 56.9
C5' C4' C3' O4' 241.2 241.1
C5' C4' C3' H4' 117.2 122.3
O4' C4' C3' H4' 235.9 241.2
C3' C4' O4' C1' 35.1 40.5
O3' C3' C4' H3' 118.6 122.5
C4' C3' O3' HO'3 296.8 179.9
H4' C4' C5' H5' 46.1 59.2
H4' C4' C5' H5'' 296.7 179.2
C5' C4' H4' O4' 118.3 122.3
C5' C4' H4' C3' 235.7 237.6
O4' C4' H4' C3' 117.4 115.4
H4' C4' O4' C1' 277.0 281.7
H4' C4' C3' O3' 342.6 336.0
H4' C4' C3' H3' 224.0 213.5
N1 C1' O4' C2' 231.9 241.1
N1 C1' O4' H1' 117.3 122.2
O4' C1' C2' C3' 28.8 23.9
O4' C1' C2' H2' 150.1 142.5
C2' C1' O4' H1' 245.4 241.1
C1' O4' C4' C3' 35.1 40.5
C1' O4' C4' H4' 277.0 281.7
N1 C1' H1' C2' 127.7 122.2
N1 C1' H1' O4' 245.2 237.8
H1' C1' C2' C3' 261.2 265.0
H1' C1' C2' H2' 22.5 23.6
C2' C1' H1' O4' 117.5 115.6
O3' C3' C2' H2' 346.9 0.0
C2' C3' O3' C4' 243.2 245.3
C2' C3' O3' H3' 119.4 122.7
O3' C3' C4' H4' 342.6 336.0
C4' C3' O3' H3' 236.2 237.4
H3' C3' C2' H2' 105.7 122.6
C2' C3' H3' C4' 118.0 114.7
C2' C3' H3' O3' 236.7 237.3
H3' C3' C4' H4' 224.0 213.5
C4' C3' H3' O3' 118.6 122.6
H3' C3' O3' HO'3 60.7 302.5
HO'3 O3' C3' H3' 60.7 302.5