PDB Chemical Component PE1

Ideal Model

Chemical Description

Name N~2~-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-LYSINE
Synonyms PYRIDOXYL-GLUTAMIC ACID-5'-MONOPHOSPHATE
Formula C14 H24 N3 O7 P
Formal charge 0
Molecular weight 377.330 g/mol
Component type L-PEPTIDE LINKING
Nonstandard Parent Id LYS

Chemical features

Atom count 49
Chiral atom count 1
Chiral atoms CA
Observed leaving atoms OXT
Bond count 49
Aromatic bond count 6

Chemical Identifiers

Systematic name (ACDLabs) N~2~-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-lysine
Systematic name (OpenEye OEToolkits) (2S)-6-azanyl-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]hexanoic acid

Chemical Descriptors

Stereo SMILES (CACTVS) Cc1ncc(CO[P](O)(O)=O)c(CN[C@@H](CCCCN)C(O)=O)c1O
SMILES (CACTVS) Cc1ncc(CO[P](O)(O)=O)c(CN[CH](CCCCN)C(O)=O)c1O
Stereo SMILES (OpenEye) Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@@H](CCCCN)C(=O)O)O
InChI descriptor InChI=1S/C14H24N3O7P/c1-9-13(18)11(10(6-16-9)8-24-25(21,22)23)7-17-12(14(19)20)4-2-3-5-15/h6,12,17-18H,2-5,7-8,15H2,1H3,(H,19,20)(H2,21,22,23)/t12-/m0/s1
InChIKey descriptor GQMAOPRRHWJXFB-LBPRGKRZSA-N

Status Information

Last modified 2020-06-17
Created 2004-11-12
Release status REL
Model PDB code 1WCB
Processing site EBI