PDB Chemical Component PE1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PE1

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.375 1.319
N1 C6 1.378 1.318
C2 C2A 1.514 1.507
C2 C3 1.447 1.387
C3 O3 1.350 1.359
C3 C4 1.454 1.391
C4 C4A 1.527 1.506
C4 C5 1.449 1.385
C4A N 1.492 1.469
C5 C6 1.394 1.383
C5 C5A 1.542 1.507
C5A O4P 1.450 1.428
O4P P 1.620 1.610
P O1P 1.486 1.480
P O2P 1.565 1.610
P O3P 1.519 1.611
N CA 1.500 1.469
CA C 1.540 1.507
CA CB 1.539 1.529
C O 1.361 1.343
C OXT 1.310 1.208
CB CG 1.521 1.530
CG CD 1.514 1.531
CD CE 1.513 1.530
CE NZ 1.480 1.469
C6 H6 1.080 1.080
C2A H2A1 1.100 1.090
C2A H2A2 1.100 1.090
C2A H2A3 1.100 1.090
O3 H3 0.950 0.967
C4A H4A1 1.100 1.090
C4A H4A2 1.100 1.090
N H 1.000 1.009
C5A H5A1 1.100 1.090
C5A H5A2 1.100 1.090
O2P H2P 0.950 0.967
O3P H3P 0.950 0.967
CA HA 1.100 1.090
CB HB1C 1.099 1.090
CB HB2C 1.100 1.091
O HB 0.950 0.967
CG HG1C 1.100 1.090
CG HG2C 1.100 1.090
CD HD1C 1.100 1.090
CD HD2C 1.100 1.089
CE HE1C 1.100 1.090
CE HE2C 1.100 1.090
NZ HZ1N 1.001 1.009
NZ HZ2N 1.000 1.009

Bond Angles for PE1

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 125.2 121.8
N1 C2 C2A 119.1 119.7
N1 C2 C3 116.8 120.6
N1 C6 C5 120.4 120.9
N1 C6 H6 119.8 119.6
C2A C2 C3 124.1 119.7
C2 C2A H2A1 109.5 109.5
C2 C2A H2A2 109.5 109.5
C2 C2A H2A3 109.5 109.4
C2 C3 O3 119.7 120.5
C2 C3 C4 119.8 119.1
O3 C3 C4 120.5 120.4
C3 O3 H3 109.5 114.0
C3 C4 C4A 117.3 120.8
C3 C4 C5 119.0 118.3
C4A C4 C5 123.8 120.8
C4 C4A N 111.5 109.5
C4 C4A H4A1 109.0 109.5
C4 C4A H4A2 109.0 109.5
C4 C5 C6 118.8 119.2
C4 C5 C5A 122.9 120.4
C4A N CA 112.9 111.1
N C4A H4A1 108.9 109.5
N C4A H4A2 108.9 109.5
C4A N H 108.6 111.0
C6 C5 C5A 118.2 120.3
C5 C6 H6 119.8 119.6
C5 C5A O4P 108.6 109.5
C5 C5A H5A1 109.7 109.5
C5 C5A H5A2 109.7 109.4
C5A O4P P 120.8 123.1
O4P C5A H5A1 109.7 109.5
O4P C5A H5A2 109.7 109.5
O4P P O1P 106.5 109.4
O4P P O2P 106.6 109.5
O4P P O3P 106.9 109.4
O1P P O2P 112.6 109.5
O1P P O3P 115.5 109.4
O2P P O3P 108.2 109.5
P O2P H2P 109.5 114.0
P O3P H3P 109.5 114.0
N CA C 108.1 109.5
N CA CB 112.1 109.5
CA N H 108.6 111.0
N CA HA 108.8 109.4
C CA CB 111.0 109.5
CA C O 110.1 120.0
CA C OXT 125.3 120.0
C CA HA 108.4 109.4
CA CB CG 111.5 109.5
CB CA HA 108.3 109.5
CA CB HB1C 108.9 109.5
CA CB HB2C 108.9 109.5
O C OXT 124.6 120.0
C O HB 109.5 117.0
CB CG CD 110.6 109.5
CG CB HB1C 109.0 109.5
CG CB HB2C 108.9 109.5
CB CG HG1C 109.2 109.5
CB CG HG2C 109.2 109.4
CG CD CE 111.0 109.4
CD CG HG1C 109.2 109.4
CD CG HG2C 109.2 109.5
CG CD HD1C 109.1 109.4
CG CD HD2C 109.1 109.5
CD CE NZ 111.3 109.4
CE CD HD1C 109.1 109.5
CE CD HD2C 109.1 109.6
CD CE HE1C 109.0 109.5
CD CE HE2C 109.0 109.5
NZ CE HE1C 109.0 109.5
NZ CE HE2C 109.0 109.5
CE NZ HZ1N 109.5 111.0
CE NZ HZ2N 109.5 111.0
H2A1 C2A H2A2 109.5 109.5
H2A1 C2A H2A3 109.5 109.5
H2A2 C2A H2A3 109.5 109.5
H4A1 C4A H4A2 109.5 109.4
H5A1 C5A H5A2 109.4 109.4
HB1C CB HB2C 109.5 109.4
HG1C CG HG2C 109.5 109.5
HD1C CD HD2C 109.5 109.5
HE1C CE HE2C 109.5 109.5
HZ1N NZ HZ2N 109.4 111.0

Torsion Angles for PE1

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 C5 359.9 360.0
C2 N1 C6 H6 179.9 180.0
C2A C2 N1 C3 179.9 180.0
N1 C2 C2A H2A1 0.0 90.0
N1 C2 C2A H2A2 120.0 210.0
N1 C2 C2A H2A3 240.0 330.0
N1 C2 C3 O3 180.2 180.1
N1 C2 C3 C4 0.3 359.9
C6 N1 C2 C2A 179.6 180.0
C6 N1 C2 C3 359.7 0.0
C4 C5 C6 N1 0.4 0.1
N1 C6 C5 C5A 180.5 180.1
C5 C6 N1 H6 180.0 180.0
C2A C2 N1 C6 179.6 180.0
N1 C2 C2A C3 180.1 180.0
C2A C2 C3 O3 0.3 0.1
C2A C2 C3 C4 180.4 179.9
H2A1 C2A C2 H2A2 240.0 240.0
H2A1 C2A C2 H2A3 120.0 120.0
H2A2 C2A C2 H2A3 240.0 240.0
C3 C2 N1 C6 359.7 0.0
N1 C2 C3 C2A 179.9 180.0
C3 C2 C2A H2A1 179.9 270.0
C3 C2 C2A H2A2 299.9 30.0
C3 C2 C2A H2A3 59.9 150.0
O3 C3 C2 C4 179.9 180.1
C2 C3 O3 H3 180.0 90.0
C2 C3 C4 C4A 179.8 180.0
C2 C3 C4 C5 0.0 0.1
C2 C3 O3 C4 180.1 179.9
O3 C3 C4 C4A 359.9 359.9
O3 C3 C4 C5 180.1 180.0
C2 C3 C4 O3 179.9 180.1
C4 C3 O3 H3 359.9 270.1
C4A C4 C3 C5 179.8 179.9
C3 C4 C4A N 39.3 90.1
C3 C4 C4A H4A1 159.6 210.1
C3 C4 C4A H4A2 279.0 330.0
C3 C4 C5 C6 359.6 359.9
C3 C4 C5 C5A 179.6 179.9
C3 C4 C4A C5 180.2 180.1
C4A C4 C5 C6 179.8 180.0
C4A C4 C5 C5A 359.8 360.0
C4 C4A N CA 185.1 180.0
N C4A C4 H4A1 239.7 240.0
N C4A C4 H4A2 120.3 120.0
C4 C4A N H 305.6 304.0
H4A1 C4A C4 H4A2 240.6 240.0
N1 C6 C5 C4 0.4 0.1
C3 C4 C5 C4A 179.8 179.9
C5 C4 C4A N 219.1 270.0
C5 C4 C4A H4A1 339.4 30.0
C5 C4 C4A H4A2 98.8 150.0
C6 C5 C4 C5A 180.0 180.0
C4 C5 C6 H6 180.5 180.1
C4 C5 C5A O4P 220.1 180.0
C4 C5 C5A H5A1 339.9 300.0
C4 C5 C5A H5A2 100.2 60.0
N C4A C4 C5 219.1 270.0
C4 C4A N H4A1 120.3 120.0
C4 C4A N H4A2 239.7 239.9
C4A N CA C 180.7 275.0
C4A N CA CB 58.0 155.0
CA N C4A H 239.5 236.0
C4A N CA HA 298.2 35.0
H4A1 C4A N H4A2 119.4 119.9
N1 C6 C5 H6 180.0 180.0
C4 C5 C6 C5A 180.0 180.0
C6 C5 C5A O4P 40.0 360.0
C6 C5 C5A H5A1 159.9 120.0
C6 C5 C5A H5A2 280.2 240.0
C4 C5 C5A C6 180.0 180.0
C5A C5 C6 H6 0.5 0.1
C5 C5A O4P P 190.4 180.0
O4P C5A C5 H5A1 240.1 239.9
O4P C5A C5 H5A2 119.9 120.0
H5A1 C5A C5 H5A2 239.7 240.1
C5 C5A O4P H5A1 119.9 120.0
C5 C5A O4P H5A2 240.1 240.0
C5A O4P P O1P 45.0 55.0
C5A O4P P O2P 284.5 175.0
C5A O4P P O3P 169.0 295.0
H5A1 C5A O4P H5A2 120.2 120.0
P O4P C5A H5A1 70.6 60.0
P O4P C5A H5A2 310.3 300.0
O1P P O4P O2P 120.5 239.9
O1P P O4P O3P 236.0 119.9
O2P P O4P O3P 115.5 240.0
O4P P O2P H2P 116.5 180.0
O4P P O3P H3P 241.7 299.9
O4P P O1P O2P 243.5 120.0
O4P P O1P O3P 118.5 240.1
O2P P O1P O3P 235.0 120.0
O1P P O2P H2P 0.0 300.0
O1P P O3P H3P 0.0 180.0
O4P P O2P O1P 116.5 240.0
O4P P O2P O3P 245.4 120.0
O1P P O2P O3P 128.9 240.0
O2P P O3P H3P 127.2 60.0
O4P P O3P O1P 241.7 119.9
O4P P O3P O2P 114.5 240.0
O1P P O3P O2P 232.8 120.0
O3P P O2P H2P 231.1 60.0
CA N C4A H4A1 64.8 60.0
CA N C4A H4A2 305.4 300.1
C4A N CA H 120.5 124.0
C CA N CB 122.7 120.1
N CA C O 342.7 180.0
N CA C OXT 161.6 359.9
C CA N HA 242.5 240.1
N CA CB CG 56.0 295.0
CB CA N HA 119.8 120.0
N CA CB HB1C 176.3 55.0
N CA CB HB2C 295.7 175.0
N CA C CB 236.7 239.9
C CA N H 60.2 151.1
N CA C HA 117.8 119.9
C CA CB CG 295.0 175.0
CB CA C HA 241.1 240.0
C CA CB HB1C 55.3 295.0
C CA CB HB2C 174.7 54.9
O C CA OXT 181.1 180.1
CA C O HB 178.9 179.9
N CA CB C 121.0 120.0
CB CA N H 297.5 31.0
N CA CB HA 239.9 240.0
CB CA C O 106.0 300.0
CB CA C OXT 284.9 120.0
C CA CB HA 118.9 120.0
CA CB CG CD 125.1 180.0
CG CB CA HB1C 239.7 240.0
CG CB CA HB2C 120.3 120.0
CA CB CG HG1C 245.2 300.0
CA CB CG HG2C 4.9 60.0
HB1C CB CA HB2C 240.6 240.1
O C CA CB 106.0 300.0
CA C O OXT 178.9 179.9
O C CA HA 224.9 60.0
OXT C CA CB 284.9 120.0
CA C OXT O 181.3 180.1
OXT C CA HA 43.7 240.0
OXT C O HB 360.0 360.0
CG CB CA HA 176.1 55.0
CA CB CG HB1C 120.3 120.0
CA CB CG HB2C 239.7 240.0
CB CG CD CE 109.3 180.0
CD CG CB HG1C 239.8 240.0
CD CG CB HG2C 120.2 120.0
CB CG CD HD1C 229.6 300.0
CB CG CD HD2C 349.1 60.0
HB1C CB CG HB2C 119.4 119.9
HG1C CG CB HG2C 240.3 239.9
CD CG CB HB1C 4.8 60.0
CD CG CB HB2C 245.4 300.0
CB CG CD HG1C 120.2 120.0
CB CG CD HG2C 239.8 240.0
CG CD CE NZ 158.2 180.0
CE CD CG HD1C 239.8 240.1
CE CD CG HD2C 120.2 120.1
CG CD CE HE1C 278.5 299.9
CG CD CE HE2C 37.9 60.0
HG1C CG CD HG2C 119.7 120.1
HD1C CD CG HD2C 240.5 240.0
CE CD CG HG1C 349.2 60.1
CE CD CG HG2C 229.5 300.0
CG CD CE HD1C 120.2 119.9
CG CD CE HD2C 239.7 240.0
NZ CE CD HE1C 239.7 240.1
NZ CE CD HE2C 120.3 120.0
CD CE NZ HZ1N 180.0 180.0
CD CE NZ HZ2N 300.0 304.0
HD1C CD CE HD2C 119.5 120.1
HE1C CE CD HE2C 240.5 239.9
NZ CE CD HD1C 38.0 60.1
NZ CE CD HD2C 278.4 300.0
CD CE NZ HE1C 120.3 120.0
CD CE NZ HE2C 239.7 240.0
HE1C CE NZ HE2C 119.4 120.1
HZ1N NZ CE HZ2N 240.0 236.0
N1 C6 H6 C5 180.0 180.0
H6 C6 C5 C5A 0.5 0.1
H2A1 C2A C2 C3 179.9 270.0
C2 C2A H2A1 H2A2 120.0 120.0
C2 C2A H2A1 H2A3 240.0 240.1
H2A2 C2A H2A1 H2A3 120.0 120.0
H2A2 C2A C2 C3 299.9 30.0
C2 C2A H2A2 H2A1 240.0 240.0
C2 C2A H2A2 H2A3 120.0 120.0
H2A1 C2A H2A2 H2A3 240.0 240.0
H2A3 C2A C2 C3 59.9 150.0
C2 C2A H2A3 H2A1 120.0 120.0
C2 C2A H2A3 H2A2 240.0 240.0
H2A1 C2A H2A3 H2A2 120.0 120.0
H3 O3 C3 C4 359.9 270.1
H4A1 C4A C4 C5 339.4 30.0
C4 C4A H4A1 N 238.1 240.0
C4 C4A H4A1 H4A2 119.1 120.0
H4A1 C4A N CA 64.8 60.0
N C4A H4A1 H4A2 241.0 240.0
H4A1 C4A N H 185.3 183.9
H4A2 C4A C4 C5 98.8 150.0
C4 C4A H4A2 N 121.9 120.0
C4 C4A H4A2 H4A1 240.9 240.0
H4A2 C4A N CA 305.4 300.1
N C4A H4A2 H4A1 119.0 119.9
H4A2 C4A N H 65.9 64.0
C4A N H CA 236.9 236.0
H N C4A H4A1 185.3 183.9
H N C4A H4A2 65.9 64.0
H N CA C 60.2 151.1
H N CA CB 297.5 31.0
H N CA HA 177.7 271.0
C5 C5A H5A1 O4P 240.8 239.9
C5 C5A H5A1 H5A2 120.4 119.9
H5A1 C5A O4P P 70.6 60.0
O4P C5A H5A1 H5A2 239.6 240.0
C5 C5A H5A2 O4P 119.2 120.0
C5 C5A H5A2 H5A1 239.6 240.0
H5A2 C5A O4P P 310.3 300.0
O4P C5A H5A2 H5A1 120.4 120.0
H2P O2P P O3P 231.1 60.0
N CA HA C 242.6 240.0
N CA HA CB 122.1 120.0
HA CA N H 177.7 271.0
C CA HA CB 239.5 240.0
HA CA C O 224.9 60.0
HA CA C OXT 43.7 240.0
HA CA CB CG 176.1 55.0
HA CA CB HB1C 296.4 175.0
HA CA CB HB2C 55.8 295.0
CA CB HB1C CG 238.1 240.0
HB1C CB CA HA 296.4 175.0
CA CB HB1C HB2C 119.1 120.0
HB1C CB CG CD 4.8 60.0
CG CB HB1C HB2C 240.9 240.0
HB1C CB CG HG1C 124.9 179.9
HB1C CB CG HG2C 244.6 300.0
CA CB HB2C CG 121.9 120.0
HB2C CB CA HA 55.8 295.0
CA CB HB2C HB1C 241.0 240.0
HB2C CB CG CD 245.4 300.0
CG CB HB2C HB1C 119.1 120.0
HB2C CB CG HG1C 5.5 60.0
HB2C CB CG HG2C 125.2 180.1
HB O C OXT 360.0 360.0
CB CG HG1C CD 238.9 240.0
HG1C CG CB HB1C 124.9 179.9
HG1C CG CB HB2C 5.5 60.0
CB CG HG1C HG2C 119.5 120.0
HG1C CG CD CE 349.2 60.1
CD CG HG1C HG2C 240.5 240.0
HG1C CG CD HD1C 109.4 180.0
HG1C CG CD HD2C 228.9 300.0
CB CG HG2C CD 121.1 120.0
HG2C CG CB HB1C 244.6 300.0
HG2C CG CB HB2C 125.2 180.1
CB CG HG2C HG1C 240.5 240.0
HG2C CG CD CE 229.5 300.0
CD CG HG2C HG1C 119.5 120.0
HG2C CG CD HD1C 349.7 59.9
HG2C CG CD HD2C 109.3 179.9
CG CD HD1C CE 238.6 240.1
HD1C CD CG HG1C 109.4 180.0
HD1C CD CG HG2C 349.7 59.9
CG CD HD1C HD2C 119.3 120.0
HD1C CD CE NZ 38.0 60.1
CE CD HD1C HD2C 240.7 239.9
HD1C CD CE HE1C 158.3 180.0
HD1C CD CE HE2C 277.7 300.1
CG CD HD2C CE 121.4 120.0
HD2C CD CG HG1C 228.9 300.0
HD2C CD CG HG2C 109.3 179.9
CG CD HD2C HD1C 240.7 240.0
HD2C CD CE NZ 278.4 300.0
CE CD HD2C HD1C 119.3 120.1
HD2C CD CE HE1C 38.7 59.9
HD2C CD CE HE2C 158.2 180.0
CD CE HE1C NZ 238.3 240.1
HE1C CE CD HD1C 158.3 180.0
HE1C CE CD HD2C 38.7 59.9
CD CE HE1C HE2C 119.2 120.1
NZ CE HE1C HE2C 240.9 240.0
HE1C CE NZ HZ1N 59.7 60.0
HE1C CE NZ HZ2N 179.7 184.0
CD CE HE2C NZ 121.7 119.9
HE2C CE CD HD1C 277.7 300.1
HE2C CE CD HD2C 158.2 180.0
CD CE HE2C HE1C 240.8 239.9
NZ CE HE2C HE1C 119.1 120.0
HE2C CE NZ HZ1N 300.3 299.9
HE2C CE NZ HZ2N 60.2 63.9
HZ1N NZ CE HE1C 59.7 60.0
HZ1N NZ CE HE2C 300.3 299.9
CE NZ HZ1N HZ2N 120.0 124.0
HZ2N NZ CE HE1C 179.7 184.0
HZ2N NZ CE HE2C 60.2 63.9
CE NZ HZ2N HZ1N 240.0 236.0