PDB Chemical Component ORD

Ideal Model

Chemical Description

Name D-ORNITHINE
Formula C5 H12 N2 O2
Formal charge 0
Molecular weight 132.161 g/mol
Component type D-PEPTIDE LINKING

Chemical features

Atom count 21
Chiral atom count 1
Chiral atoms CA
Observed leaving atoms OXT H2 HXT
Bond count 20
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) D-ornithine
Systematic name (OpenEye OEToolkits) (2R)-2,5-diaminopentanoic acid

Chemical Descriptors

Stereo SMILES (CACTVS) NCCC[C@@H](N)C(O)=O
SMILES (CACTVS) NCCC[CH](N)C(O)=O
Stereo SMILES (OpenEye) C(C[C@H](C(=O)O)N)CN
InChI descriptor InChI=1S/C5H12N2O2/c6-3-1-2-4(7)5(8)9/h4H,1-3,6-7H2,(H,8,9)/t4-/m1/s1
InChIKey descriptor AHLPHDHHMVZTML-SCSAIBSYSA-N

Status Information

Last modified 2023-11-03
Created 2010-09-08
Release status REL
Model PDB code 1DSR
Processing site EBI