PDB Chemical Component ORD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ORD
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.482 |
1.469 |
| CA |
CB |
1.555 |
1.530 |
| CA |
C |
1.550 |
1.507 |
| CB |
CG |
1.547 |
1.530 |
| CG |
CD |
1.537 |
1.530 |
| CD |
NE |
1.479 |
1.469 |
| C |
O |
1.234 |
1.208 |
| C |
OXT |
1.342 |
1.343 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
HA |
1.100 |
1.090 |
| CB |
HB2 |
1.099 |
1.090 |
| CB |
HB3 |
1.100 |
1.090 |
| CG |
HG2 |
1.100 |
1.090 |
| CG |
HG3 |
1.100 |
1.090 |
| CD |
HD2 |
1.100 |
1.091 |
| CD |
HD3 |
1.100 |
1.090 |
| NE |
HE1 |
1.000 |
1.009 |
| NE |
HE2 |
1.000 |
1.009 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for ORD
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CA |
CB |
111.0 |
109.4 |
| N |
CA |
C |
107.7 |
109.5 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
HA |
109.1 |
109.5 |
| CB |
CA |
C |
107.7 |
109.4 |
| CA |
CB |
CG |
117.0 |
109.5 |
| CB |
CA |
HA |
109.1 |
109.5 |
| CA |
CB |
HB2 |
107.0 |
109.5 |
| CA |
CB |
HB3 |
105.3 |
109.5 |
| CA |
C |
O |
119.5 |
120.0 |
| CA |
C |
OXT |
118.4 |
120.0 |
| C |
CA |
HA |
112.2 |
109.5 |
| CB |
CG |
CD |
112.3 |
109.5 |
| CG |
CB |
HB2 |
107.0 |
109.4 |
| CG |
CB |
HB3 |
105.3 |
109.4 |
| CB |
CG |
HG2 |
108.5 |
109.5 |
| CB |
CG |
HG3 |
107.9 |
109.5 |
| CG |
CD |
NE |
109.4 |
109.5 |
| CD |
CG |
HG2 |
108.6 |
109.5 |
| CD |
CG |
HG3 |
107.9 |
109.4 |
| CG |
CD |
HD2 |
109.5 |
109.5 |
| CG |
CD |
HD3 |
109.5 |
109.5 |
| NE |
CD |
HD2 |
109.5 |
109.4 |
| NE |
CD |
HD3 |
109.5 |
109.5 |
| CD |
NE |
HE1 |
109.5 |
111.0 |
| CD |
NE |
HE2 |
109.5 |
111.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| H |
N |
H2 |
109.5 |
111.0 |
| HB2 |
CB |
HB3 |
115.6 |
109.5 |
| HG2 |
CG |
HG3 |
111.7 |
109.5 |
| HD2 |
CD |
HD3 |
109.4 |
109.4 |
| HE1 |
NE |
HE2 |
109.4 |
111.0 |
Torsion Angles for ORD
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CB |
CA |
N |
C |
117.7 |
119.9 |
| N |
CA |
CB |
CG |
64.0 |
65.0 |
| CB |
CA |
N |
HA |
239.8 |
240.0 |
| N |
CA |
CB |
HB2 |
184.0 |
185.0 |
| N |
CA |
CB |
HB3 |
307.5 |
305.0 |
| N |
CA |
C |
O |
57.7 |
20.0 |
| N |
CA |
C |
OXT |
234.4 |
200.0 |
| C |
CA |
N |
HA |
122.1 |
120.1 |
| H |
N |
CA |
H2 |
240.0 |
236.1 |
| N |
CA |
CB |
C |
242.3 |
240.1 |
| CB |
CA |
N |
H |
207.2 |
60.0 |
| CB |
CA |
N |
H2 |
327.2 |
183.9 |
| N |
CA |
CB |
HA |
120.3 |
120.0 |
| CB |
CA |
C |
O |
298.0 |
260.0 |
| CB |
CA |
C |
OXT |
114.6 |
80.1 |
| C |
CA |
CB |
HA |
237.9 |
240.0 |
| CA |
CB |
CG |
CD |
183.0 |
180.0 |
| CG |
CB |
CA |
HB2 |
240.0 |
240.0 |
| CG |
CB |
CA |
HB3 |
116.5 |
120.0 |
| CA |
CB |
CG |
HG2 |
303.0 |
300.0 |
| CA |
CB |
CG |
HG3 |
64.2 |
60.0 |
| HB2 |
CB |
CA |
HB3 |
236.5 |
239.9 |
| N |
CA |
C |
CB |
119.7 |
119.9 |
| C |
CA |
N |
H |
89.5 |
300.1 |
| C |
CA |
N |
H2 |
209.5 |
64.0 |
| N |
CA |
C |
HA |
239.8 |
239.9 |
| C |
CA |
CB |
CG |
181.7 |
185.0 |
| CB |
CA |
C |
HA |
120.1 |
120.0 |
| C |
CA |
CB |
HB2 |
301.7 |
304.9 |
| C |
CA |
CB |
HB3 |
65.2 |
65.0 |
| CA |
C |
OXT |
HXT |
183.4 |
180.0 |
| CG |
CB |
CA |
C |
181.7 |
185.0 |
| CG |
CB |
CA |
HA |
303.7 |
305.0 |
| CA |
CB |
CG |
HB2 |
120.0 |
120.0 |
| CA |
CB |
CG |
HB3 |
243.5 |
240.0 |
| CB |
CG |
CD |
NE |
174.9 |
180.0 |
| CD |
CG |
CB |
HG2 |
240.0 |
240.0 |
| CD |
CG |
CB |
HG3 |
118.8 |
120.0 |
| CB |
CG |
CD |
HD2 |
294.9 |
300.0 |
| CB |
CG |
CD |
HD3 |
54.9 |
60.0 |
| HB2 |
CB |
CG |
HB3 |
123.5 |
120.0 |
| HG2 |
CG |
CB |
HG3 |
238.8 |
240.0 |
| CD |
CG |
CB |
HB2 |
63.0 |
60.0 |
| CD |
CG |
CB |
HB3 |
299.5 |
300.0 |
| CB |
CG |
CD |
HG2 |
120.0 |
120.0 |
| CB |
CG |
CD |
HG3 |
241.2 |
240.0 |
| NE |
CD |
CG |
HD2 |
240.0 |
240.0 |
| NE |
CD |
CG |
HD3 |
120.0 |
120.1 |
| CG |
CD |
NE |
HE1 |
18.0 |
56.0 |
| CG |
CD |
NE |
HE2 |
137.9 |
180.0 |
| HG2 |
CG |
CD |
HG3 |
121.2 |
120.0 |
| HD2 |
CD |
CG |
HD3 |
240.0 |
240.0 |
| NE |
CD |
CG |
HG2 |
54.9 |
60.0 |
| NE |
CD |
CG |
HG3 |
293.7 |
300.0 |
| CG |
CD |
NE |
HD2 |
120.0 |
120.0 |
| CG |
CD |
NE |
HD3 |
240.0 |
239.9 |
| HD2 |
CD |
NE |
HD3 |
120.0 |
119.9 |
| HE1 |
NE |
CD |
HE2 |
240.1 |
236.0 |
| CA |
C |
O |
OXT |
176.5 |
180.0 |
| O |
C |
CA |
HA |
177.9 |
140.0 |
| CA |
C |
OXT |
O |
183.4 |
180.0 |
| OXT |
C |
CA |
HA |
354.5 |
320.0 |
| H |
N |
CA |
CB |
207.2 |
60.0 |
| H |
N |
CA |
C |
89.5 |
300.1 |
| CA |
N |
H |
H2 |
120.0 |
123.9 |
| H |
N |
CA |
HA |
327.4 |
180.0 |
| H2 |
N |
CA |
CB |
327.2 |
183.9 |
| H2 |
N |
CA |
C |
209.5 |
64.0 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| H2 |
N |
CA |
HA |
87.4 |
303.9 |
| N |
CA |
HA |
CB |
238.6 |
240.0 |
| N |
CA |
HA |
C |
119.3 |
120.0 |
| HA |
CA |
N |
H |
327.4 |
180.0 |
| HA |
CA |
N |
H2 |
87.4 |
303.9 |
| CB |
CA |
HA |
C |
240.7 |
240.0 |
| HA |
CA |
CB |
CG |
303.7 |
305.0 |
| HA |
CA |
CB |
HB2 |
63.7 |
65.0 |
| HA |
CA |
CB |
HB3 |
187.3 |
185.0 |
| HA |
CA |
C |
O |
177.9 |
140.0 |
| HA |
CA |
C |
OXT |
354.5 |
320.0 |
| HB2 |
CB |
CA |
C |
301.7 |
304.9 |
| CA |
CB |
HB2 |
CG |
233.8 |
240.0 |
| HB2 |
CB |
CA |
HA |
63.7 |
65.0 |
| CA |
CB |
HB2 |
HB3 |
116.9 |
120.1 |
| HB2 |
CB |
CG |
CD |
63.0 |
60.0 |
| CG |
CB |
HB2 |
HB3 |
243.1 |
240.1 |
| HB2 |
CB |
CG |
HG2 |
183.0 |
180.0 |
| HB2 |
CB |
CG |
HG3 |
304.2 |
300.0 |
| HB3 |
CB |
CA |
C |
65.2 |
65.0 |
| CA |
CB |
HB3 |
CG |
124.2 |
120.0 |
| HB3 |
CB |
CA |
HA |
187.3 |
185.0 |
| CA |
CB |
HB3 |
HB2 |
242.1 |
239.9 |
| HB3 |
CB |
CG |
CD |
299.5 |
300.0 |
| CG |
CB |
HB3 |
HB2 |
117.9 |
119.9 |
| HB3 |
CB |
CG |
HG2 |
59.5 |
60.0 |
| HB3 |
CB |
CG |
HG3 |
180.7 |
180.0 |
| CB |
CG |
HG2 |
CD |
237.7 |
240.0 |
| HG2 |
CG |
CB |
HB2 |
183.0 |
180.0 |
| HG2 |
CG |
CB |
HB3 |
59.5 |
60.0 |
| CB |
CG |
HG2 |
HG3 |
118.8 |
120.0 |
| HG2 |
CG |
CD |
NE |
54.9 |
60.0 |
| CD |
CG |
HG2 |
HG3 |
241.1 |
240.0 |
| HG2 |
CG |
CD |
HD2 |
174.9 |
180.0 |
| HG2 |
CG |
CD |
HD3 |
294.9 |
300.0 |
| CB |
CG |
HG3 |
CD |
121.6 |
120.0 |
| HG3 |
CG |
CB |
HB2 |
304.2 |
300.0 |
| HG3 |
CG |
CB |
HB3 |
180.7 |
180.0 |
| CB |
CG |
HG3 |
HG2 |
240.8 |
240.0 |
| HG3 |
CG |
CD |
NE |
293.7 |
300.0 |
| CD |
CG |
HG3 |
HG2 |
119.2 |
120.0 |
| HG3 |
CG |
CD |
HD2 |
53.7 |
60.0 |
| HG3 |
CG |
CD |
HD3 |
173.7 |
180.0 |
| CG |
CD |
HD2 |
NE |
240.0 |
240.0 |
| HD2 |
CD |
CG |
HG2 |
174.9 |
180.0 |
| HD2 |
CD |
CG |
HG3 |
53.7 |
60.0 |
| CG |
CD |
HD2 |
HD3 |
120.0 |
120.0 |
| NE |
CD |
HD2 |
HD3 |
240.0 |
240.0 |
| HD2 |
CD |
NE |
HE1 |
258.0 |
296.0 |
| HD2 |
CD |
NE |
HE2 |
17.9 |
60.0 |
| CG |
CD |
HD3 |
NE |
120.0 |
120.1 |
| HD3 |
CD |
CG |
HG2 |
294.9 |
300.0 |
| HD3 |
CD |
CG |
HG3 |
173.7 |
180.0 |
| CG |
CD |
HD3 |
HD2 |
240.0 |
240.0 |
| NE |
CD |
HD3 |
HD2 |
120.0 |
119.9 |
| HD3 |
CD |
NE |
HE1 |
138.0 |
176.1 |
| HD3 |
CD |
NE |
HE2 |
257.9 |
300.1 |
| HE1 |
NE |
CD |
HD2 |
258.0 |
296.0 |
| HE1 |
NE |
CD |
HD3 |
138.0 |
176.1 |
| CD |
NE |
HE1 |
HE2 |
120.0 |
124.0 |
| HE2 |
NE |
CD |
HD2 |
17.9 |
60.0 |
| HE2 |
NE |
CD |
HD3 |
257.9 |
300.1 |
| CD |
NE |
HE2 |
HE1 |
240.0 |
236.0 |