PDB Chemical Component IMK

Ideal Model

Chemical Description

Name 2-(BETA-D-GLUCOPYRANOSYL)-5-METHYL-1-BENZIMIDAZOLE
Synonyms 2-(BETA-D-GLUCOPYRANOSYL)-5-METHYL-1,2,3-BENZIMIDAZOLE
Formula C14 H18 N2 O5
Formal charge 0
Molecular weight 294.303 g/mol
Component type NON-POLYMER

Chemical features

Atom count 39
Chiral atom count 5
Chiral atoms C1 C2 C3 C4 C5
Bond count 41
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) (1S)-1,5-anhydro-1-(5-methyl-1H-benzimidazol-2-yl)-D-glucitol
Systematic name (OpenEye OEToolkits) (2R,3S,4R,5R,6S)-2-(hydroxymethyl)-6-(5-methyl-1H-benzimidazol-2-yl)oxane-3,4,5-triol

Chemical Descriptors

Stereo SMILES (CACTVS) Cc1ccc2[nH]c(nc2c1)[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O
SMILES (CACTVS) Cc1ccc2[nH]c(nc2c1)[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O
Stereo SMILES (OpenEye) Cc1ccc2c(c1)nc([nH]2)[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O
InChI descriptor InChI=1S/C14H18N2O5/c1-6-2-3-7-8(4-6)16-14(15-7)13-12(20)11(19)10(18)9(5-17)21-13/h2-4,9-13,17-20H,5H2,1H3,(H,15,16)/t9-,10-,11+,12-,13-/m1/s1
InChIKey descriptor XIJZORUYQZBFJK-UJPOAAIJSA-N

Status Information

Last modified 2020-06-17
Created 2004-10-05
Release status REL
Model PDB code 1XKX
Processing site RCSB