PDB Chemical Component IMK

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for IMK

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.559 1.531
C1 O5 1.462 1.429
C1 C13 1.508 1.507
C1 H1 1.101 1.091
C2 O2 1.437 1.429
C2 C3 1.555 1.532
C2 H2 1.100 1.090
O2 HO2 0.950 0.966
C3 O3 1.430 1.429
C3 C4 1.554 1.532
C3 H3 1.100 1.090
O3 HO3 0.950 0.967
C4 O4 1.443 1.430
C4 C5 1.565 1.531
C4 H4 1.100 1.090
O4 HO4 0.950 0.967
C5 O5 1.467 1.429
C5 C6 1.553 1.530
C5 H5 1.100 1.090
C6 O6 1.436 1.429
C6 H61 1.100 1.090
C6 H62 1.100 1.089
O6 HO6 0.950 0.967
C7 C8 1.415 1.397
C7 C12 1.432 1.367
C7 H7 1.080 1.081
C8 C9 1.408 1.405
C8 N2 1.339 1.358
C9 C10 1.421 1.388
C9 N1 1.352 1.380
C10 C11 1.429 1.379
C10 H10 1.080 1.080
C11 C12 1.433 1.387
C11 H11 1.080 1.079
C12 C14   1.506
N1 C13 1.311 1.360
N1 HN1 0.999 0.971
C13 N2 1.275 1.301
C14 H141   1.091
C14 H142   1.090
C14 H143   1.089

Bond Angles for IMK

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 O5 111.0 109.4
C2 C1 C13 109.2 109.5
C2 C1 H1 108.2 109.4
C1 C2 O2 111.6 109.6
C1 C2 C3 108.8 109.2
C1 C2 H2 108.2 109.5
O5 C1 C13 110.0 109.5
O5 C1 H1 109.5 109.5
C1 O5 C5 112.9 114.2
C13 C1 H1 108.8 109.5
C1 C13 N1 124.3 125.0
C1 C13 N2 123.6 124.9
O2 C2 C3 110.0 109.5
O2 C2 H2 109.9 109.5
C2 O2 HO2 109.5 114.0
C3 C2 H2 108.3 109.6
C2 C3 O3 110.9 109.6
C2 C3 C4 108.8 109.0
C2 C3 H3 108.2 109.5
O3 C3 C4 110.8 109.5
O3 C3 H3 109.9 109.5
C3 O3 HO3 109.5 114.0
C4 C3 H3 108.2 109.7
C3 C4 O4 110.6 109.5
C3 C4 C5 109.4 109.2
C3 C4 H4 108.3 109.5
O4 C4 C5 110.5 109.5
O4 C4 H4 109.8 109.5
C4 O4 HO4 109.5 114.0
C5 C4 H4 108.2 109.6
C4 C5 O5 110.6 109.4
C4 C5 C6 110.5 109.5
C4 C5 H5 108.3 109.4
O5 C5 C6 109.5 109.5
O5 C5 H5 109.5 109.5
C6 C5 H5 108.5 109.5
C5 C6 O6 109.7 109.4
C5 C6 H61 109.4 109.5
C5 C6 H62 109.4 109.5
O6 C6 H61 109.4 109.5
O6 C6 H62 109.4 109.5
C6 O6 HO6 109.5 114.0
H61 C6 H62 109.4 109.5
C8 C7 C12 116.2 119.9
C8 C7 H7 121.9 120.1
C7 C8 C9 122.9 119.5
C7 C8 N2 132.4 133.6
C12 C7 H7 121.9 120.0
C7 C12 C11 121.3 120.6
C7 C12 C14   119.7
C9 C8 N2 104.7 106.9
C8 C9 C10 121.6 119.8
C8 C9 N1 107.1 106.0
C8 N2 C13 109.8 109.6
C10 C9 N1 131.4 134.2
C9 C10 C11 116.7 119.7
C9 C10 H10 121.6 120.1
C9 N1 C13 106.4 107.3
C9 N1 HN1 126.8 126.3
C11 C10 H10 121.7 120.2
C10 C11 C12 121.3 120.5
C10 C11 H11 119.4 119.8
C12 C11 H11 119.3 119.8
C11 C12 C14   119.7
C12 C14 H141   109.4
C12 C14 H142   109.5
C12 C14 H143   109.5
C13 N1 HN1 126.8 126.4
N1 C13 N2 112.0 110.1
H141 C14 H142   109.4
H141 C14 H143   109.5
H142 C14 H143   109.5

Torsion Angles for IMK

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O5 C1 C2 C13 238.5 240.0
O5 C1 C2 H1 120.2 119.9
C2 C1 O5 C5 300.8 298.9
C13 C1 C2 H1 241.7 240.0
C2 C1 C13 N1 121.8 125.0
C2 C1 C13 N2 302.4 304.9
O2 C2 C1 C3 121.5 119.9
O2 C2 C1 H2 239.0 239.9
C1 C2 O2 HO2 180.0 179.9
C3 C2 C1 H2 117.5 120.0
C1 C2 C3 O3 180.2 183.2
C1 C2 C3 C4 302.2 303.0
C1 C2 C3 H3 59.6 63.0
C2 C1 O5 C13 121.0 120.0
C2 C1 O5 H1 240.6 240.1
O5 C1 C2 O2 179.7 177.5
O5 C1 C2 C3 58.2 57.6
O5 C1 C2 H2 300.7 297.6
C13 C1 O5 H1 119.6 120.1
O5 C1 C13 N1 243.9 245.0
O5 C1 C13 N2 64.4 64.9
C4 C5 O5 C1 58.4 61.1
C1 O5 C5 C6 180.3 181.1
C1 O5 C5 H5 299.1 301.2
C2 C1 C13 O5 237.9 240.0
C2 C1 C13 H1 117.9 120.0
C13 C1 C2 O2 301.2 297.5
C13 C1 C2 C3 179.7 177.6
C13 C1 C2 H2 62.2 57.6
O5 C1 C13 H1 240.0 240.0
C13 C1 O5 C5 179.8 178.9
C8 N2 C13 C1 179.6 180.1
C9 N1 C13 C1 180.4 179.9
C1 C13 N1 HN1 0.4 360.0
N1 C13 C1 N2 179.4 180.0
C2 C1 H1 O5 121.1 119.9
C2 C1 H1 C13 241.4 240.0
H1 C1 C2 O2 59.5 57.5
H1 C1 C2 C3 298.0 297.6
H1 C1 C2 H2 180.5 177.7
O5 C1 H1 C13 120.3 120.1
H1 C1 O5 C5 60.3 58.8
H1 C1 C13 N1 3.8 5.0
H1 C1 C13 N2 184.4 185.0
O2 C2 C1 O5 179.7 177.5
O2 C2 C1 C13 301.2 297.5
O2 C2 C1 H1 59.5 57.5
C1 C2 O2 C3 239.1 240.3
C1 C2 O2 H2 120.0 120.1
C3 C2 O2 H2 240.9 239.9
O2 C2 C3 O3 57.7 63.2
O2 C2 C3 C4 179.7 183.1
O2 C2 C3 H3 297.1 303.0
C3 C2 C1 O5 58.2 57.6
C3 C2 C1 C13 179.7 177.6
C3 C2 C1 H1 298.0 297.6
C1 C2 C3 O2 122.5 120.0
C1 C2 C3 H2 242.6 240.0
O2 C2 C3 H2 120.1 120.1
C3 C2 O2 HO2 300.9 299.7
O3 C3 C2 C4 238.0 240.2
O3 C3 C2 H3 120.6 120.2
C2 C3 O3 HO3 180.0 300.1
C4 C3 C2 H3 242.6 240.0
C2 C3 C4 O4 179.6 176.9
C2 C3 C4 C5 57.6 57.0
C2 C3 C4 H4 300.0 297.0
H2 C2 C1 O5 300.7 297.6
H2 C2 C1 C13 62.2 57.6
H2 C2 C1 H1 180.5 177.7
C1 C2 H2 O2 238.0 239.8
C1 C2 H2 C3 117.8 119.7
O2 C2 H2 C3 239.9 239.9
H2 C2 O2 HO2 60.0 59.8
H2 C2 C3 O3 297.6 303.1
H2 C2 C3 C4 59.6 63.0
H2 C2 C3 H3 177.0 183.0
HO2 O2 C2 C3 300.9 299.7
HO2 O2 C2 H2 60.0 59.8
O3 C3 C2 H2 297.6 303.1
C2 C3 O3 C4 120.9 119.5
C2 C3 O3 H3 240.4 239.8
C4 C3 O3 H3 119.6 120.3
O3 C3 C4 O4 301.7 296.8
O3 C3 C4 C5 179.7 176.9
O3 C3 C4 H4 62.1 56.9
C4 C3 C2 H2 59.6 63.0
C2 C3 C4 O3 237.9 240.1
C2 C3 C4 H3 117.3 119.9
O3 C3 C4 H3 239.5 239.8
C4 C3 O3 HO3 59.1 180.5
O4 C4 C3 C5 122.0 119.9
O4 C4 C3 H4 239.7 239.9
C3 C4 O4 HO4 180.0 60.0
C5 C4 C3 H4 117.7 120.0
C3 C4 C5 O5 302.7 302.4
C3 C4 C5 C6 181.4 182.4
C3 C4 C5 H5 62.7 62.3
H3 C3 C2 H2 177.0 183.0
C2 C3 H3 O3 121.2 120.2
C2 C3 H3 C4 242.3 240.4
O3 C3 H3 C4 121.1 120.2
H3 C3 O3 HO3 299.6 60.2
H3 C3 C4 O4 62.3 57.0
H3 C3 C4 C5 300.3 297.1
H3 C3 C4 H4 182.6 177.1
HO3 O3 C3 C4 59.1 180.5
HO3 O3 C3 H3 299.6 60.2
O4 C4 C3 H3 62.3 57.0
C3 C4 O4 C5 238.7 240.3
C3 C4 O4 H4 119.4 120.2
C5 C4 O4 H4 240.7 239.9
O4 C4 C5 O5 180.6 182.5
O4 C4 C5 C6 59.3 62.5
O4 C4 C5 H5 300.7 302.4
C1 O5 C5 C4 58.4 61.1
C5 C4 C3 H3 300.3 297.1
C3 C4 C5 O4 122.1 119.9
C3 C4 C5 H4 242.3 240.0
O4 C4 C5 H4 120.2 120.1
C5 C4 O4 HO4 301.3 179.7
O5 C5 C4 C6 121.3 120.0
O5 C5 C4 H5 240.0 240.1
C6 C5 C4 H5 118.6 120.1
C4 C5 C6 O6 189.1 185.0
C4 C5 C6 H61 309.1 305.0
C4 C5 C6 H62 69.0 65.0
H4 C4 C3 H3 182.6 177.1
C3 C4 H4 O4 239.1 239.8
C3 C4 H4 C5 118.4 119.8
O4 C4 H4 C5 239.3 239.9
H4 C4 O4 HO4 60.6 299.8
H4 C4 C5 O5 60.4 62.4
H4 C4 C5 C6 299.1 302.4
H4 C4 C5 H5 180.5 182.3
HO4 O4 C4 C5 301.3 179.7
HO4 O4 C4 H4 60.6 299.8
C5 O5 C1 C13 179.8 178.9
C5 O5 C1 H1 60.3 58.8
O5 C5 C4 H4 60.4 62.4
C4 C5 O5 C6 238.1 240.0
C4 C5 O5 H5 119.3 119.9
C6 C5 O5 H5 241.2 239.9
O5 C5 C6 O6 67.1 65.1
O5 C5 C6 H61 187.2 185.0
O5 C5 C6 H62 307.1 305.1
C6 C5 C4 H4 299.1 302.4
C4 C5 C6 O5 122.0 119.9
C4 C5 C6 H5 241.4 240.0
O5 C5 C6 H5 119.5 120.0
O6 C6 C5 H61 240.0 240.1
O6 C6 C5 H62 120.1 120.0
C5 C6 O6 HO6 180.0 180.0
H61 C6 C5 H62 240.1 239.9
H5 C5 C4 H4 180.5 182.3
C4 C5 H5 O5 239.3 240.1
C4 C5 H5 C6 119.9 120.1
O5 C5 H5 C6 240.6 239.9
H5 C5 C6 O6 307.7 305.0
H5 C5 C6 H61 67.7 65.0
H5 C5 C6 H62 187.6 185.0
O6 C6 C5 H5 307.7 305.0
C5 C6 O6 H61 120.0 120.0
C5 C6 O6 H62 239.9 240.0
H61 C6 O6 H62 119.9 120.1
H61 C6 C5 H5 67.7 65.0
C5 C6 H61 O6 239.8 240.1
C5 C6 H61 H62 119.9 120.0
O6 C6 H61 H62 240.1 240.0
H61 C6 O6 HO6 59.9 60.1
H62 C6 C5 H5 187.6 185.0
C5 C6 H62 O6 120.3 120.0
C5 C6 H62 H61 240.1 240.0
O6 C6 H62 H61 119.9 120.0
H62 C6 O6 HO6 300.0 300.0
HO6 O6 C6 H61 59.9 60.1
HO6 O6 C6 H62 300.0 300.0
C12 C7 C8 H7 180.0 180.3
C8 C7 C12 C11 359.8 0.0
C8 C7 C12 C14   180.0
C9 C8 C7 N2 180.2 180.1
C7 C8 C9 C10 359.8 360.0
C7 C8 C9 N1 179.9 179.9
C7 C8 N2 C13 180.1 180.1
C8 C7 C12 H7 180.0 179.7
C12 C7 C8 C9 0.2 0.0
C12 C7 C8 N2 180.1 179.9
C10 C11 C12 C7 0.0 359.9
C7 C12 C11 H11 180.0 180.0
C11 C12 C7 C14   180.1
C7 C12 C14 H141   90.0
C7 C12 C14 H142   210.0
C7 C12 C14 H143   330.0
C8 C7 H7 C12 180.0 180.3
H7 C7 C8 C9 180.2 179.7
H7 C7 C8 N2 0.1 359.6
H7 C7 C12 C11 179.8 180.3
H7 C7 C12 C14   0.3
C9 C8 C7 C12 0.2 0.0
C9 C8 C7 H7 180.2 179.7
C7 C8 C9 N2 179.9 179.9
C9 C8 N2 C13 359.9 360.0
C10 C9 C8 N1 179.9 180.0
C8 C9 C10 C11 360.0 360.0
C8 C9 C10 H10 180.0 180.0
C8 C9 N1 C13 0.0 0.0
C8 C9 N1 HN1 180.0 180.0
C1 C13 N2 C8 179.6 180.1
N2 C8 C7 C12 180.1 179.9
N2 C8 C7 H7 0.1 359.6
C7 C8 N2 C9 180.1 180.1
N2 C8 C9 C10 180.0 180.0
N2 C8 C9 N1 0.0 360.0
N1 C13 N2 C8 0.1 0.0
C10 C9 C8 N2 180.0 180.0
C8 C9 C10 N1 180.1 179.9
C10 C9 N1 C13 180.1 180.0
C10 C9 N1 HN1 0.1 359.9
C11 C10 C9 H10 180.0 180.0
C9 C10 C11 C12 0.1 0.1
C9 C10 C11 H11 180.1 180.0
C1 C13 N1 C9 180.4 179.9
N1 C9 C8 N2 0.0 360.0
C8 C9 N1 C10 179.9 180.1
N1 C9 C10 C11 179.9 180.0
N1 C9 C10 H10 359.9 0.0
C13 N1 C9 HN1 180.0 180.0
C9 N1 C13 N2 359.9 360.0
C7 C12 C11 C10 0.0 359.9
C11 C10 C9 N1 179.9 180.0
C9 C10 C11 H10 180.0 180.0
C12 C11 C10 H11 180.0 180.1
C10 C11 C12 C14   180.0
H10 C10 C9 N1 359.9 0.0
C9 C10 H10 C11 180.0 180.0
H10 C10 C11 C12 180.1 180.1
H10 C10 C11 H11 0.1 360.0
C11 C12 C7 H7 179.8 180.3
C7 C12 C11 C14   179.9
C12 C11 C10 H10 180.1 180.1
C10 C11 C12 H11 180.0 179.9
C11 C12 C14 H141   270.0
C11 C12 C14 H142   29.9
C11 C12 C14 H143   149.9
H11 C11 C10 H10 0.1 360.0
C10 C11 H11 C12 180.0 180.1
H11 C11 C12 C14   0.1
C14 C12 C7 H7   0.3
C7 C12 C14 C11   180.1
C14 C12 C11 H11   0.1
H141 C14 C12 H142   240.1
H141 C14 C12 H143   120.1
H142 C14 C12 H143   240.0
N1 C13 C1 H1 3.8 5.0
C1 C13 N1 N2 180.5 180.0
C8 N2 C13 N1 0.1 0.0
C9 N1 C13 HN1 180.0 180.0
C9 N1 HN1 C13 180.0 180.1
HN1 N1 C13 N2 179.9 180.0
N2 C13 C1 H1 184.4 185.0
C1 C13 N2 N1 179.5 180.0
N2 C13 N1 HN1 179.9 180.0
C12 C14 H141 H142   119.9
C12 C14 H141 H143   239.9
H142 C14 H141 H143   120.0
C12 C14 H142 H141   240.1
C12 C14 H142 H143   120.0
H141 C14 H142 H143   240.0
C12 C14 H143 H141   120.0
C12 C14 H143 H142   240.0
H141 C14 H143 H142   120.0