PDB Chemical Component GTF

Ideal Model

Chemical Description

Name 2'-deoxy-2',2'-difluorocytidine 5'-(tetrahydrogen triphosphate)
Synonyms Gemcitabine-TRIPHOSPHATE
Formula C9 H14 F2 N3 O13 P3
Formal charge 0
Molecular weight 503.138 g/mol
Component type NON-POLYMER

Chemical features

Atom count 44
Chiral atom count 3
Chiral atoms C1' C3' C4'
Bond count 45
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-2',2'-difluorocytidine 5'-(tetrahydrogen triphosphate)
Systematic name (OpenEye OEToolkits) [[(2~{R},3~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-4,4-bis(fluoranyl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)C2(F)F
SMILES (CACTVS) NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)C2(F)F
Stereo SMILES (OpenEye) C1=CN(C(=O)N=C1N)[C@H]2C([C@@H]([C@H](O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)(F)F
InChI descriptor InChI=1S/C9H14F2N3O13P3/c10-9(11)6(15)4(25-7(9)14-2-1-5(12)13-8(14)16)3-24-29(20,21)27-30(22,23)26-28(17,18)19/h1-2,4,6-7,15H,3H2,(H,20,21)(H,22,23)(H2,12,13,16)(H2,17,18,19)/t4-,6-,7-/m1/s1
InChIKey descriptor YMOXEIOKAJSRQX-QPPQHZFASA-N

Status Information

Last modified 2020-06-17
Created 2010-04-12
Release status REL
Model PDB code 6DW5
Processing site RCSB