PDB Chemical Component GTF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GTF
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O3G |
PG |
1.505 |
1.480 |
| O1G |
PG |
1.500 |
1.610 |
| PG |
O2G |
1.528 |
1.609 |
| PG |
O3B |
1.727 |
1.610 |
| O3B |
PB |
1.787 |
1.610 |
| O1B |
PB |
1.547 |
1.480 |
| F2 |
C2' |
1.447 |
1.398 |
| C3' |
O3' |
1.366 |
1.428 |
| C3' |
C2' |
1.594 |
1.545 |
| C3' |
C4' |
1.634 |
1.545 |
| O2A |
PA |
1.512 |
1.480 |
| PB |
O2B |
1.577 |
1.609 |
| PB |
O3A |
1.672 |
1.610 |
| C5' |
C4' |
1.594 |
1.530 |
| C5' |
O5' |
1.434 |
1.429 |
| F1 |
C2' |
1.385 |
1.399 |
| C2' |
C1' |
1.324 |
1.545 |
| C4' |
O4' |
1.358 |
1.444 |
| O5' |
PA |
1.709 |
1.611 |
| PA |
O3A |
1.693 |
1.610 |
| PA |
O1A |
1.590 |
1.609 |
| C1' |
O4' |
1.690 |
1.444 |
| C1' |
N1 |
1.532 |
1.465 |
| C6 |
N1 |
1.539 |
1.363 |
| C6 |
C5 |
1.502 |
1.353 |
| N1 |
C2 |
1.561 |
1.345 |
| C5 |
C4 |
1.501 |
1.410 |
| C2 |
O2 |
1.248 |
1.220 |
| C2 |
N3 |
1.525 |
1.332 |
| C4 |
N3 |
1.509 |
1.328 |
| C4 |
N4 |
1.384 |
1.376 |
| N4 |
H1 |
1.000 |
0.970 |
| N4 |
H2 |
1.000 |
0.970 |
| C5 |
H3 |
1.080 |
1.080 |
| C6 |
H4 |
1.080 |
1.080 |
| C1' |
H5 |
1.100 |
1.089 |
| O1A |
H6 |
0.950 |
0.967 |
| O1G |
H7 |
0.950 |
0.967 |
| O2B |
H8 |
0.951 |
0.967 |
| O2G |
H9 |
0.950 |
0.967 |
| C3' |
H10 |
1.100 |
1.091 |
| O3' |
H11 |
0.950 |
0.967 |
| C4' |
H12 |
1.100 |
1.091 |
| C5' |
H13 |
1.100 |
1.090 |
| C5' |
H14 |
1.100 |
1.090 |
Bond Angles for GTF
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1G |
PG |
O2G |
116.9 |
109.5 |
| O1G |
PG |
O3B |
115.2 |
109.5 |
| O2G |
PG |
O3B |
105.6 |
109.5 |
| PG |
O2G |
H9 |
109.5 |
114.0 |
| O1B |
PB |
O2B |
119.5 |
109.5 |
| O1B |
PB |
O3A |
111.4 |
109.5 |
| F1 |
C2' |
F2 |
117.5 |
110.5 |
| F2 |
C2' |
C1' |
113.9 |
110.5 |
| O3' |
C3' |
C4' |
116.0 |
110.5 |
| O3' |
C3' |
H10 |
109.6 |
110.5 |
| C3' |
O3' |
H11 |
109.5 |
114.0 |
| C3' |
C4' |
O4' |
99.8 |
104.8 |
| C4' |
C3' |
H10 |
106.3 |
110.6 |
| C3' |
C4' |
H12 |
108.1 |
110.3 |
| O2A |
PA |
O3A |
101.9 |
109.4 |
| O2B |
PB |
O3A |
103.5 |
109.5 |
| PB |
O2B |
H8 |
109.5 |
114.0 |
| PA |
O3A |
PB |
119.8 |
134.0 |
| C5' |
C4' |
H12 |
108.5 |
110.4 |
| O5' |
C5' |
H13 |
109.0 |
109.5 |
| O5' |
C5' |
H14 |
109.0 |
109.4 |
| F1 |
C2' |
C1' |
97.9 |
110.5 |
| C2' |
C1' |
O4' |
101.9 |
104.8 |
| C2' |
C1' |
H5 |
110.6 |
110.5 |
| C1' |
O4' |
C4' |
109.7 |
105.3 |
| O4' |
C4' |
H12 |
111.9 |
110.4 |
| O1A |
PA |
O3A |
114.8 |
109.5 |
| PA |
O1A |
H6 |
109.5 |
114.0 |
| O4' |
C1' |
H5 |
106.0 |
110.4 |
| C6 |
C5 |
H3 |
121.8 |
120.6 |
| N1 |
C2 |
O2 |
123.8 |
119.5 |
| N1 |
C2 |
N3 |
116.4 |
121.1 |
| O2 |
C2 |
N3 |
119.8 |
119.4 |
| C4 |
N4 |
H1 |
120.0 |
120.0 |
| C4 |
N4 |
H2 |
120.0 |
120.0 |
| H1 |
N4 |
H2 |
120.0 |
120.0 |
| H13 |
C5' |
H14 |
109.4 |
109.5 |
Torsion Angles for GTF
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O3G |
PG |
O2G |
H9 |
360.0 |
180.0 |
| O2G |
PG |
O1G |
O3B |
235.1 |
240.0 |
| O1G |
PG |
O2G |
H9 |
245.1 |
60.0 |
| O1G |
PG |
O2G |
O3B |
129.6 |
120.0 |
| O1G |
PG |
O3B |
O2G |
229.4 |
240.0 |
| O3B |
PG |
O2G |
H9 |
115.6 |
300.0 |
| O3B |
PB |
O2B |
H8 |
233.2 |
60.0 |
| O2B |
PB |
O1B |
O3A |
120.6 |
120.0 |
| O1B |
PB |
O2B |
H8 |
0.0 |
180.0 |
| PA |
O3A |
PB |
O1B |
283.5 |
45.1 |
| F1 |
C2' |
F2 |
C1' |
113.6 |
122.6 |
| F2 |
C2' |
C1' |
O4' |
269.7 |
265.2 |
| F2 |
C2' |
C1' |
H5 |
157.3 |
146.4 |
| O3' |
C3' |
C4' |
O4' |
276.2 |
217.3 |
| C4' |
C3' |
O3' |
H10 |
239.7 |
237.3 |
| O3' |
C3' |
C4' |
H12 |
33.3 |
336.2 |
| C3' |
C2' |
C1' |
O4' |
26.8 |
24.0 |
| C3' |
C2' |
C1' |
H5 |
274.5 |
265.2 |
| O3' |
C3' |
C4' |
H10 |
122.0 |
122.6 |
| C4' |
C3' |
O3' |
H11 |
296.1 |
176.1 |
| C5' |
C4' |
C3' |
H12 |
120.5 |
122.3 |
| C1' |
O4' |
C4' |
C3' |
328.6 |
40.5 |
| O4' |
C4' |
C3' |
H12 |
242.9 |
241.2 |
| O2A |
PA |
O3A |
PB |
21.3 |
319.9 |
| O1A |
PA |
O2A |
O3A |
242.2 |
240.0 |
| O2A |
PA |
O1A |
H6 |
0.0 |
180.0 |
| O1B |
PB |
O2B |
O3A |
235.5 |
240.0 |
| PA |
O3A |
PB |
O2B |
153.8 |
285.0 |
| O1B |
PB |
O3A |
O2B |
129.6 |
120.0 |
| O3A |
PB |
O2B |
H8 |
124.6 |
300.0 |
| O1A |
PA |
O3A |
PB |
127.1 |
80.0 |
| C5' |
C4' |
C3' |
H10 |
31.7 |
335.9 |
| C3' |
C4' |
C5' |
H12 |
239.8 |
237.7 |
| O4' |
C4' |
C5' |
H12 |
126.0 |
122.3 |
| O5' |
C5' |
C4' |
H12 |
284.5 |
307.3 |
| H13 |
C5' |
O5' |
H14 |
119.4 |
120.0 |
| F2 |
C2' |
F1 |
C1' |
237.8 |
237.4 |
| F1 |
C2' |
C1' |
O4' |
144.8 |
142.6 |
| F1 |
C2' |
C1' |
H5 |
32.5 |
23.8 |
| F1 |
C2' |
C1' |
F2 |
235.1 |
237.4 |
| C2' |
C1' |
O4' |
C4' |
4.4 |
319.4 |
| O4' |
C1' |
C2' |
H5 |
112.4 |
118.9 |
| O4' |
C4' |
C3' |
H10 |
154.1 |
94.7 |
| C3' |
C4' |
O4' |
H12 |
114.2 |
118.8 |
| C5' |
C4' |
O4' |
H12 |
235.8 |
237.6 |
| C4' |
O4' |
C1' |
H5 |
120.2 |
78.4 |
| O5' |
PA |
O1A |
H6 |
119.5 |
300.0 |
| O1B |
PB |
O3A |
PA |
283.5 |
45.1 |
| O2B |
PB |
O3A |
PA |
153.8 |
285.0 |
| O3A |
PA |
O1A |
H6 |
252.4 |
60.0 |
| O2A |
PA |
O1A |
O3A |
107.7 |
120.0 |
| C3' |
C4' |
O4' |
C1' |
328.6 |
40.5 |
| C2' |
C1' |
O4' |
H5 |
244.2 |
241.0 |
| C1' |
O4' |
C4' |
H12 |
214.4 |
281.7 |
| F1 |
C2' |
C1' |
N1 |
270.9 |
261.4 |
| O2 |
C2 |
N1 |
N3 |
177.6 |
180.0 |
| C5 |
C4 |
N4 |
H1 |
181.2 |
180.0 |
| C5 |
C4 |
N4 |
H2 |
1.2 |
360.0 |
| N1 |
C2 |
O2 |
N3 |
182.5 |
180.0 |
| N1 |
C2 |
N3 |
O2 |
177.7 |
180.0 |
| H1 |
N4 |
C4 |
H2 |
180.0 |
180.0 |
| C4 |
N4 |
H1 |
H2 |
180.0 |
180.0 |
| C4 |
N4 |
H2 |
H1 |
180.0 |
180.0 |
| H4 |
C6 |
C5 |
H3 |
359.6 |
0.1 |
| C2' |
C1' |
H5 |
O4' |
109.7 |
115.4 |
| H5 |
C1' |
O4' |
C4' |
120.2 |
78.4 |
| H6 |
O1A |
PA |
O3A |
252.4 |
60.0 |
| H7 |
O1G |
PG |
O2G |
122.0 |
60.0 |
| H7 |
O1G |
PG |
O3B |
246.9 |
180.0 |
| H8 |
O2B |
PB |
O3A |
124.6 |
300.0 |
| H9 |
O2G |
PG |
O3B |
115.6 |
300.0 |
| O3' |
C3' |
H10 |
C4' |
234.0 |
237.3 |
| H10 |
C3' |
O3' |
H11 |
56.4 |
298.8 |
| H10 |
C3' |
C4' |
O4' |
154.1 |
94.7 |
| H10 |
C3' |
C4' |
H12 |
271.2 |
213.5 |
| H11 |
O3' |
C3' |
C4' |
296.1 |
176.1 |
| H11 |
O3' |
C3' |
H10 |
56.4 |
298.8 |
| C3' |
C4' |
H12 |
O4' |
251.1 |
244.7 |
| H12 |
C4' |
C3' |
H10 |
271.2 |
213.5 |
| H13 |
C5' |
C4' |
H12 |
44.9 |
67.2 |
| O5' |
C5' |
H13 |
H14 |
240.9 |
240.0 |
| H14 |
C5' |
C4' |
H12 |
164.2 |
187.3 |
| O5' |
C5' |
H14 |
H13 |
119.1 |
120.0 |