PDB Chemical Component F74

Ideal Model

Chemical Description

Name 8-chloro-2'-deoxyguanosine 5'-(dihydrogen phosphate)
Formula C10 H13 Cl N5 O7 P
Formal charge 0
Molecular weight 381.666 g/mol
Component type DNA linking
Nonstandard Parent Id DG

Chemical features

Atom count 37
Chiral atom count 3
Chiral atoms C4' C3' C1'
Observed leaving atoms H13 OP3 H1
Bond count 39
Aromatic bond count 5

Chemical Identifiers

Systematic name (ACDLabs) 8-chloro-2'-deoxyguanosine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2~{R},3~{S},5~{R})-5-(2-azanyl-8-chloranyl-6-oxidanylidene-3~{H}-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)c2nc(Cl)n([C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)c2N1
SMILES (CACTVS) NC1=NC(=O)c2nc(Cl)n([CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)c2N1
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1n2c3c(nc2Cl)C(=O)N=C(N3)N)COP(=O)(O)O)O
InChI descriptor InChI=1S/C10H13ClN5O7P/c11-9-13-6-7(14-10(12)15-8(6)18)16(9)5-1-3(17)4(23-5)2-22-24(19,20)21/h3-5,17H,1-2H2,(H2,19,20,21)(H3,12,14,15,18)/t3-,4+,5+/m0/s1
InChIKey descriptor GZEVWLMEFXMNBR-VPENINKCSA-N

Status Information

Last modified 2019-03-01
Created 2018-03-08
Release status REL
Model PDB code 6CPQ
Processing site RCSB