PDB Chemical Component F74
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for F74
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O3' |
C3' |
1.425 |
1.429 |
OP1 |
P |
1.512 |
1.480 |
C5' |
C4' |
1.511 |
1.530 |
C5' |
O5' |
1.417 |
1.429 |
C4' |
C3' |
1.506 |
1.545 |
C4' |
O4' |
1.429 |
1.444 |
C3' |
C2' |
1.524 |
1.545 |
O5' |
P |
1.598 |
1.610 |
P |
OP2 |
1.511 |
1.610 |
O4' |
C1' |
1.431 |
1.444 |
C2' |
C1' |
1.525 |
1.544 |
C1' |
N9 |
1.488 |
1.464 |
CL |
C8 |
1.732 |
1.736 |
N9 |
C8 |
1.340 |
1.365 |
N9 |
C4 |
1.332 |
1.362 |
C8 |
N7 |
1.350 |
1.303 |
C4 |
N3 |
1.350 |
1.372 |
C4 |
C5 |
1.477 |
1.390 |
N3 |
C2 |
1.354 |
1.359 |
N7 |
C5 |
1.347 |
1.354 |
N2 |
C2 |
1.355 |
1.369 |
C2 |
N1 |
1.348 |
1.315 |
C5 |
C6 |
1.479 |
1.467 |
N1 |
C6 |
1.338 |
1.342 |
C6 |
O6 |
1.251 |
1.221 |
OP2 |
H2 |
0.949 |
0.967 |
C5' |
H3 |
1.100 |
1.091 |
C5' |
H4 |
1.100 |
1.090 |
C4' |
H5 |
1.101 |
1.090 |
C3' |
H6 |
1.100 |
1.090 |
C2' |
H7 |
1.100 |
1.091 |
C2' |
H8 |
1.100 |
1.090 |
C1' |
H9 |
1.100 |
1.090 |
N3 |
H10 |
1.000 |
0.969 |
N2 |
H11 |
1.000 |
0.970 |
N2 |
H12 |
1.000 |
0.970 |
O3' |
H13 |
0.950 |
0.967 |
P |
OP3 |
1.608 |
1.610 |
OP3 |
H1 |
0.950 |
0.967 |
Bond Angles for F74
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O3' |
C3' |
H6 |
112.3 |
110.6 |
OP1 |
P |
OP2 |
120.7 |
109.4 |
OP1 |
P |
OP3 |
108.7 |
109.5 |
C5' |
C4' |
C3' |
107.8 |
110.4 |
C5' |
C4' |
O4' |
111.0 |
110.4 |
C4' |
C5' |
H3 |
109.2 |
109.4 |
C4' |
C5' |
H4 |
109.2 |
109.5 |
C5' |
C4' |
H5 |
110.0 |
110.3 |
C3' |
C4' |
O4' |
106.6 |
104.8 |
C4' |
C3' |
C2' |
105.3 |
104.0 |
C3' |
C4' |
H5 |
110.1 |
110.4 |
C4' |
C3' |
H6 |
111.1 |
110.5 |
C4' |
O4' |
C1' |
111.2 |
105.3 |
O4' |
C4' |
H5 |
111.2 |
110.5 |
C3' |
C2' |
C1' |
102.6 |
104.1 |
C2' |
C3' |
H6 |
110.8 |
110.5 |
C3' |
C2' |
H7 |
111.1 |
110.5 |
C3' |
C2' |
H8 |
111.2 |
110.5 |
O5' |
P |
OP3 |
102.2 |
109.4 |
P |
OP2 |
H2 |
109.5 |
114.0 |
OP2 |
P |
OP3 |
109.9 |
109.5 |
O4' |
C1' |
N9 |
105.5 |
110.4 |
O4' |
C1' |
H9 |
109.6 |
110.4 |
C2' |
C1' |
N9 |
118.2 |
110.4 |
C1' |
C2' |
H7 |
111.2 |
110.5 |
C1' |
C2' |
H8 |
111.1 |
110.6 |
C2' |
C1' |
H9 |
108.3 |
110.3 |
N9 |
C1' |
H9 |
108.7 |
110.3 |
N9 |
C8 |
N7 |
116.6 |
109.5 |
N9 |
C4 |
N3 |
133.2 |
134.7 |
C4 |
N3 |
C2 |
120.8 |
120.5 |
C4 |
N3 |
H10 |
119.6 |
119.7 |
N3 |
C2 |
N1 |
122.5 |
122.5 |
N2 |
C2 |
N1 |
119.2 |
118.8 |
C5 |
C6 |
O6 |
121.0 |
120.7 |
H3 |
C5' |
H4 |
109.5 |
109.5 |
H7 |
C2' |
H8 |
109.5 |
110.5 |
H11 |
N2 |
H12 |
120.0 |
120.0 |
P |
OP3 |
H1 |
109.5 |
113.9 |
Torsion Angles for F74
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O3' |
C3' |
C4' |
H5 |
21.1 |
336.3 |
C4' |
C3' |
O3' |
H6 |
239.5 |
237.3 |
C2' |
C3' |
O3' |
H6 |
125.8 |
122.7 |
O3' |
C3' |
C2' |
H7 |
204.9 |
237.3 |
O3' |
C3' |
C2' |
H8 |
327.1 |
359.9 |
O5' |
P |
OP1 |
OP3 |
110.3 |
240.0 |
OP1 |
P |
OP2 |
H2 |
360.0 |
179.9 |
OP2 |
P |
OP1 |
OP3 |
231.8 |
120.1 |
OP1 |
P |
OP3 |
H1 |
360.0 |
60.0 |
C3' |
C4' |
C5' |
O4' |
116.4 |
115.3 |
C5' |
C4' |
C3' |
C2' |
259.7 |
217.2 |
C3' |
C4' |
C5' |
H5 |
239.9 |
237.7 |
C5' |
C4' |
C3' |
H6 |
19.8 |
335.8 |
C5' |
C4' |
O4' |
C1' |
114.9 |
159.3 |
O4' |
C4' |
C5' |
H5 |
123.5 |
122.4 |
H3 |
C5' |
C4' |
H4 |
240.3 |
120.0 |
C5' |
O5' |
P |
OP3 |
336.2 |
185.0 |
O3' |
C3' |
C4' |
H6 |
121.3 |
122.7 |
C5' |
C4' |
C3' |
O4' |
240.8 |
241.2 |
C3' |
C4' |
C5' |
H3 |
280.7 |
65.0 |
C3' |
C4' |
C5' |
H4 |
40.4 |
305.0 |
C5' |
C4' |
C3' |
H5 |
120.0 |
122.2 |
C3' |
C4' |
O4' |
C1' |
357.7 |
40.5 |
O4' |
C4' |
C3' |
H5 |
239.3 |
241.0 |
C4' |
C3' |
C2' |
C1' |
332.8 |
0.1 |
C2' |
C3' |
C4' |
H6 |
239.9 |
241.3 |
C4' |
C3' |
C2' |
H7 |
91.7 |
118.7 |
C4' |
C3' |
C2' |
H8 |
213.9 |
241.4 |
C5' |
C4' |
O4' |
C3' |
117.1 |
118.8 |
O4' |
C4' |
C5' |
H3 |
164.3 |
309.7 |
O4' |
C4' |
C5' |
H4 |
284.0 |
189.7 |
C5' |
C4' |
O4' |
H5 |
237.2 |
237.7 |
O4' |
C4' |
C3' |
C2' |
19.0 |
336.0 |
C3' |
C4' |
O4' |
H5 |
120.0 |
118.9 |
O4' |
C4' |
C3' |
H6 |
139.0 |
94.6 |
C4' |
O4' |
C1' |
N9 |
218.3 |
200.6 |
C4' |
O4' |
C1' |
H9 |
101.4 |
78.3 |
O3' |
C3' |
C2' |
H6 |
233.4 |
237.3 |
C2' |
C3' |
C4' |
O4' |
19.0 |
336.0 |
C2' |
C3' |
C4' |
H5 |
139.7 |
94.9 |
C4' |
C3' |
C2' |
H6 |
120.2 |
118.7 |
C3' |
C2' |
C1' |
N9 |
144.3 |
142.8 |
C1' |
C2' |
C3' |
H7 |
241.1 |
241.4 |
C1' |
C2' |
C3' |
H8 |
118.9 |
118.7 |
C3' |
C2' |
C1' |
H9 |
268.4 |
265.0 |
H7 |
C2' |
C3' |
H8 |
237.8 |
237.4 |
OP1 |
P |
O5' |
OP3 |
245.4 |
120.0 |
O5' |
P |
OP2 |
H2 |
123.0 |
60.0 |
OP2 |
P |
O5' |
OP3 |
114.9 |
240.0 |
O5' |
P |
OP3 |
H1 |
245.5 |
180.0 |
OP1 |
P |
OP2 |
OP3 |
127.6 |
239.9 |
O5' |
P |
OP2 |
OP3 |
250.6 |
120.0 |
OP2 |
P |
OP3 |
H1 |
134.0 |
300.0 |
C1' |
O4' |
C4' |
H5 |
237.7 |
281.6 |
C2' |
C1' |
O4' |
N9 |
126.3 |
118.9 |
O4' |
C1' |
C2' |
H7 |
267.2 |
265.3 |
O4' |
C1' |
C2' |
H8 |
145.0 |
142.6 |
C2' |
C1' |
O4' |
H9 |
243.2 |
241.2 |
N9 |
C1' |
O4' |
H9 |
116.9 |
122.3 |
C4' |
O4' |
C1' |
C2' |
344.6 |
319.5 |
C1' |
C2' |
C3' |
H6 |
212.6 |
241.4 |
C3' |
C2' |
C1' |
H7 |
118.9 |
118.6 |
C3' |
C2' |
C1' |
H8 |
241.1 |
241.3 |
O4' |
C1' |
C2' |
N9 |
241.8 |
241.1 |
O4' |
C1' |
C2' |
H9 |
117.7 |
118.9 |
N9 |
C1' |
C2' |
H9 |
235.9 |
237.8 |
H7 |
C2' |
C1' |
H8 |
122.2 |
122.7 |
O4' |
C1' |
N9 |
H9 |
242.6 |
237.6 |
N9 |
C1' |
C2' |
H7 |
25.4 |
24.2 |
N9 |
C1' |
C2' |
H8 |
263.2 |
261.5 |
C2' |
C1' |
N9 |
H9 |
123.9 |
122.2 |
C1' |
N9 |
C8 |
N7 |
183.0 |
180.0 |
C1' |
N9 |
C4 |
N3 |
355.3 |
0.0 |
C4 |
N9 |
C8 |
N7 |
357.6 |
0.0 |
N9 |
C4 |
N3 |
C2 |
181.4 |
180.0 |
N9 |
C4 |
N3 |
H10 |
1.5 |
0.0 |
C4 |
N3 |
C2 |
N1 |
0.6 |
0.3 |
C4 |
C5 |
C6 |
O6 |
179.6 |
180.1 |
C4 |
N3 |
C2 |
H10 |
180.0 |
180.1 |
N2 |
C2 |
N3 |
N1 |
179.6 |
179.4 |
N3 |
C2 |
N2 |
N1 |
180.4 |
180.5 |
H2 |
OP2 |
P |
OP3 |
232.3 |
300.0 |
H3 |
C5' |
C4' |
C3' |
280.7 |
65.0 |
H3 |
C5' |
C4' |
O4' |
164.3 |
309.7 |
C4' |
C5' |
H3 |
H4 |
119.5 |
240.0 |
H3 |
C5' |
C4' |
H5 |
40.8 |
187.3 |
H4 |
C5' |
C4' |
C3' |
40.4 |
305.0 |
H4 |
C5' |
C4' |
O4' |
284.0 |
189.7 |
C4' |
C5' |
H4 |
H3 |
240.5 |
120.0 |
H4 |
C5' |
C4' |
H5 |
160.5 |
67.3 |
C5' |
C4' |
H5 |
C3' |
241.3 |
237.8 |
C5' |
C4' |
H5 |
O4' |
123.4 |
122.3 |
H5 |
C4' |
C5' |
H3 |
40.8 |
187.3 |
H5 |
C4' |
C5' |
H4 |
160.5 |
67.3 |
C3' |
C4' |
H5 |
O4' |
242.1 |
244.6 |
H5 |
C4' |
C3' |
C2' |
139.7 |
94.9 |
H5 |
C4' |
C3' |
H6 |
259.8 |
213.6 |
H5 |
C4' |
O4' |
C1' |
237.7 |
281.6 |
H6 |
C3' |
C4' |
O4' |
139.0 |
94.6 |
C4' |
C3' |
H6 |
C2' |
243.3 |
245.4 |
H6 |
C3' |
C4' |
H5 |
259.8 |
213.6 |
H6 |
C3' |
C2' |
C1' |
212.6 |
241.4 |
H6 |
C3' |
C2' |
H7 |
331.5 |
0.0 |
H6 |
C3' |
C2' |
H8 |
93.7 |
122.7 |
C3' |
C2' |
H7 |
C1' |
246.3 |
245.3 |
H7 |
C2' |
C3' |
H6 |
331.5 |
0.0 |
C3' |
C2' |
H7 |
H8 |
123.2 |
122.6 |
H7 |
C2' |
C1' |
N9 |
25.4 |
24.2 |
C1' |
C2' |
H7 |
H8 |
236.8 |
237.3 |
H7 |
C2' |
C1' |
H9 |
149.5 |
146.4 |
C3' |
C2' |
H8 |
C1' |
113.6 |
114.7 |
H8 |
C2' |
C3' |
H6 |
93.7 |
122.7 |
C3' |
C2' |
H8 |
H7 |
236.8 |
237.4 |
H8 |
C2' |
C1' |
N9 |
263.2 |
261.5 |
C1' |
C2' |
H8 |
H7 |
123.2 |
122.7 |
H8 |
C2' |
C1' |
H9 |
27.4 |
23.7 |
O4' |
C1' |
H9 |
N9 |
114.8 |
122.3 |
C2' |
C1' |
H9 |
N9 |
230.4 |
237.7 |
H9 |
C1' |
C2' |
H7 |
149.5 |
146.4 |
H9 |
C1' |
C2' |
H8 |
27.4 |
23.7 |
C4 |
N3 |
H10 |
C2 |
180.0 |
179.9 |
H10 |
N3 |
C2 |
N1 |
180.6 |
180.3 |
H11 |
N2 |
C2 |
N1 |
360.0 |
0.0 |
H12 |
N2 |
C2 |
N1 |
180.0 |
179.9 |
H13 |
O3' |
C3' |
H6 |
300.5 |
302.7 |
OP1 |
P |
OP3 |
OP2 |
226.0 |
120.0 |
OP3 |
P |
OP2 |
H2 |
232.3 |
300.0 |