PDB Chemical Component CCC

Ideal Model

Chemical Description

Name CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE
Formula C9 H13 N3 O10 P2
Formal charge 0
Molecular weight 385.161 g/mol
Component type RNA LINKING
Nonstandard Parent Id C

Chemical features

Atom count 37
Chiral atom count 5
Chiral atoms PC C4' C3' C2' C1'
Observed leaving atoms OP3
Bond count 39
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) [(2S,3aR,4R,6R,6aR)-6-(4-amino-2-oxopyrimidin-1(2H)-yl)-2-hydroxy-2-oxidotetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-4-yl]methyl dihydrogen phosphate
Systematic name (OpenEye OEToolkits) [(1R,3S,5R,6R,8R)-6-(4-amino-2-oxo-pyrimidin-1-yl)-3-hydroxy-3-oxo-2,4,7-trioxa-3$l^{5}-phosphabicyclo[3.3.0]octan-8-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@H]3O[P@@](O)(=O)O[C@@H]23
SMILES (CACTVS) NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH]3O[P](O)(=O)O[CH]23
Stereo SMILES (OpenEye) C1=CN(C(=O)N=C1N)[C@H]2[C@H]3[C@@H]([C@H](O2)COP(=O)(O)O)O[P@@](=O)(O3)O
InChI descriptor InChI=1S/C9H13N3O10P2/c10-5-1-2-12(9(13)11-5)8-7-6(21-24(17,18)22-7)4(20-8)3-19-23(14,15)16/h1-2,4,6-8H,3H2,(H,17,18)(H2,10,11,13)(H2,14,15,16)/t4-,6-,7-,8-/m1/s1
InChIKey descriptor IZJNKZMLZILGRK-XVFCMESISA-N

Status Information

Last modified 2011-06-04
Created 2000-01-19
Release status REL
Model PDB code 1DUL
Processing site RCSB