PDB Chemical Component CCC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CCC

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PC O1C 1.487 1.480
PC O2C 1.483 1.610
PC O3' 1.612 1.631
PC O2' 1.609 1.632
O2C HOC2 0.950 0.967
P OP1 1.484 1.480
P OP2 1.486 1.609
P OP3 1.606 1.610
P O5' 1.594 1.610
OP2 HOP2 0.950 0.967
OP3 HOP3 0.950 0.966
O5' C5' 1.424 1.428
C5' C4' 1.511 1.531
C5' H5' 1.115 1.090
C5' H5'' 1.115 1.089
C4' O4' 1.448 1.443
C4' C3' 1.523 1.544
C4' H4' 1.116 1.090
O4' C1' 1.418 1.443
C3' O3' 1.424 1.439
C3' C2' 1.523 1.545
C3' H3' 1.114 1.090
C2' O2' 1.413 1.448
C2' C1' 1.531 1.544
C2' H2' 1.115 1.090
C1' N1 1.470 1.465
C1' H1' 1.116 1.089
N1 C2 1.391 1.345
N1 C6 1.366 1.363
C2 O2 1.239 1.220
C2 N3 1.350 1.332
N3 C4 1.329 1.326
C4 N4 1.336 1.375
C4 C5 1.427 1.410
N4 H41 1.019 0.970
N4 H42 1.020 0.970
C5 C6 1.342 1.354
C5 H5 1.102 1.080
C6 H6 1.103 1.080

Bond Angles for CCC

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1C PC O2C 108.8 112.3
O1C PC O3' 109.2 110.9
O1C PC O2' 109.2 110.9
O2C PC O3' 109.0 110.9
O2C PC O2' 108.9 110.9
PC O2C HOC2 108.8 106.8
O3' PC O2' 111.7 100.4
PC O3' C3' 99.2 103.3
PC O2' C2' 97.3 103.4
OP1 P OP2 119.6 109.4
OP1 P OP3 108.0 109.4
OP1 P O5' 108.7 109.5
OP2 P OP3 107.1 109.4
OP2 P O5' 108.1 109.5
P OP2 HOP2 119.6 106.8
OP3 P O5' 104.3 109.5
P OP3 HOP3 108.0 106.8
P O5' C5' 120.6 106.8
O5' C5' C4' 110.5 109.5
O5' C5' H5' 111.8 109.5
O5' C5' H5'' 111.9 109.6
C4' C5' H5' 111.8 109.4
C4' C5' H5'' 111.8 109.4
C5' C4' O4' 109.2 110.4
C5' C4' C3' 116.5 110.5
C5' C4' H4' 103.3 110.3
H5' C5' H5'' 98.5 109.5
O4' C4' C3' 103.9 104.8
O4' C4' H4' 115.9 110.4
C4' O4' C1' 109.5 105.3
C3' C4' H4' 108.6 110.4
C4' C3' O3' 110.9 108.8
C4' C3' C2' 102.3 104.1
C4' C3' H3' 113.2 111.3
O4' C1' C2' 107.9 104.9
O4' C1' N1 108.6 110.4
O4' C1' H1' 112.8 110.4
O3' C3' C2' 109.8 110.0
O3' C3' H3' 106.3 111.1
C2' C3' H3' 114.3 111.3
C3' C2' O2' 112.4 109.0
C3' C2' C1' 101.8 104.0
C3' C2' H2' 112.7 112.4
O2' C2' C1' 109.9 109.0
O2' C2' H2' 105.1 111.2
C1' C2' H2' 115.1 111.0
C2' C1' N1 114.1 110.4
C2' C1' H1' 107.2 110.4
N1 C1' H1' 106.5 110.3
C1' N1 C2 118.3 119.8
C1' N1 C6 121.3 119.8
C2 N1 C6 120.3 120.3
N1 C2 O2 118.6 119.5
N1 C2 N3 119.5 121.0
N1 C6 C5 120.9 119.3
N1 C6 H6 120.4 120.3
O2 C2 N3 121.8 119.5
C2 N3 C4 120.0 120.8
N3 C4 N4 117.7 120.2
N3 C4 C5 121.9 119.6
N4 C4 C5 120.4 120.2
C4 N4 H41 117.7 120.0
C4 N4 H42 109.2 120.0
C4 C5 C6 117.3 119.0
C4 C5 H5 124.2 120.5
H41 N4 H42 109.2 119.9
C6 C5 H5 118.5 120.5
C5 C6 H6 118.7 120.4

Torsion Angles for CCC

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2C PC O1C O3' 118.8 124.6
O2C PC O1C O2' 241.2 235.4
O1C PC O2C HOC2 180.0 55.3
O3' PC O1C O2' 122.4 110.7
O1C PC O3' C3' 244.1 207.9
O1C PC O2' C2' 134.5 152.4
O1C PC O2C O3' 241.1 235.4
O1C PC O2C O2' 119.0 124.7
O3' PC O2C O2' 237.9 249.3
O2C PC O3' C3' 125.5 82.4
O2C PC O2' C2' 253.1 277.9
O1C PC O3' O2C 118.7 125.4
O1C PC O3' O2' 239.1 242.7
O2C PC O3' O2' 120.4 117.2
O3' PC O2C HOC2 298.9 180.0
O3' PC O2' C2' 13.6 35.1
C4' C3' O3' PC 91.2 136.0
PC O3' C3' C2' 338.8 22.6
PC O3' C3' H3' 214.7 258.9
O1C PC O2' O2C 241.3 234.6
O1C PC O2' O3' 120.9 117.3
O2C PC O2' O3' 239.5 242.7
O2' PC O2C HOC2 61.0 290.6
O2' PC O3' C3' 5.0 325.2
C3' C2' O2' PC 332.8 336.8
PC O2' C2' C1' 220.2 223.9
PC O2' C2' H2' 95.8 101.2
HOC2 O2C PC O3' 298.9 180.0
HOC2 O2C PC O2' 61.0 290.6
OP2 P OP1 OP3 237.3 119.9
OP2 P OP1 O5' 124.7 239.9
OP1 P OP2 HOP2 180.0 300.0
OP3 P OP1 O5' 247.4 120.0
OP1 P OP3 HOP3 180.0 180.0
OP1 P O5' C5' 174.7 60.0
OP1 P OP2 OP3 123.1 240.1
OP1 P OP2 O5' 235.0 120.0
OP3 P OP2 O5' 111.9 240.0
OP2 P OP3 HOP3 310.0 60.1
OP2 P O5' C5' 43.5 180.0
OP1 P OP3 OP2 230.0 119.9
OP1 P OP3 O5' 115.5 240.0
OP2 P OP3 O5' 245.6 120.1
OP3 P OP2 HOP2 56.9 60.0
OP3 P O5' C5' 289.8 300.0
OP1 P O5' OP2 131.2 240.0
OP1 P O5' OP3 244.9 120.0
OP2 P O5' OP3 113.7 240.0
O5' P OP2 HOP2 305.0 180.0
O5' P OP3 HOP3 64.4 300.0
P O5' C5' C4' 181.6 180.0
P O5' C5' H5' 306.9 60.1
P O5' C5' H5'' 56.3 300.0
HOP2 OP2 P OP3 56.9 60.0
HOP2 OP2 P O5' 305.0 180.0
HOP3 OP3 P O5' 64.4 300.0
C4' C5' O5' H5' 234.7 120.0
C4' C5' O5' H5'' 125.3 240.0
O5' C5' C4' O4' 298.3 61.5
O5' C5' C4' C3' 55.5 176.9
O5' C5' C4' H4' 174.4 299.2
H5' C5' O5' H5'' 250.5 120.1
O5' C5' C4' H5' 125.3 240.0
O5' C5' C4' H5'' 234.7 120.1
H5' C5' C4' H5'' 109.4 240.0
O4' C4' C5' C3' 242.8 244.6
O4' C4' C5' H4' 123.9 122.3
C5' C4' O4' C1' 150.1 159.4
C3' C4' C5' H4' 241.1 237.7
C5' C4' C3' O3' 85.6 99.8
C5' C4' C3' C2' 202.6 217.1
C5' C4' C3' H3' 326.1 337.0
O5' C5' H5' C4' 235.5 120.0
O5' C5' H5' H5'' 117.8 239.9
C4' C5' H5' H5'' 242.3 119.9
H5' C5' C4' O4' 173.0 181.5
H5' C5' C4' C3' 290.2 296.9
H5' C5' C4' H4' 49.1 59.2
O5' C5' H5'' C4' 124.5 240.0
O5' C5' H5'' H5' 242.2 120.1
C4' C5' H5'' H5' 117.7 240.1
H5'' C5' C4' O4' 63.6 301.4
H5'' C5' C4' C3' 180.8 56.9
H5'' C5' C4' H4' 299.6 179.2
O4' C4' C5' H5' 173.0 181.5
O4' C4' C5' H5'' 63.6 301.4
C5' C4' O4' C3' 124.9 119.0
C5' C4' O4' H4' 243.9 237.8
C3' C4' O4' H4' 119.0 118.8
O4' C4' C3' O3' 205.6 218.7
O4' C4' C3' C2' 322.6 336.0
O4' C4' C3' H3' 86.2 95.9
C4' O4' C1' C2' 357.4 319.5
C4' O4' C1' N1 233.3 200.7
C4' O4' C1' H1' 115.5 78.5
PC O3' C3' C4' 91.2 136.0
C3' C4' C5' H5' 290.2 296.9
C3' C4' C5' H5'' 180.8 56.9
C5' C4' C3' O4' 239.9 241.1
C5' C4' C3' H4' 116.0 122.3
O4' C4' C3' H4' 236.1 241.2
C3' C4' O4' C1' 25.2 40.5
O3' C3' C4' C2' 243.0 242.7
O3' C3' C4' H3' 119.5 122.8
C2' C3' C4' H3' 236.5 240.0
C4' C3' C2' O2' 277.3 244.0
C4' C3' C2' C1' 34.8 0.1
C4' C3' C2' H2' 158.8 120.3
H4' C4' C5' H5' 49.1 59.2
H4' C4' C5' H5'' 299.6 179.2
C5' C4' H4' O4' 119.4 122.3
C5' C4' H4' C3' 235.8 237.6
O4' C4' H4' C3' 116.4 115.4
H4' C4' O4' C1' 266.2 281.7
H4' C4' C3' O3' 329.6 337.5
H4' C4' C3' C2' 86.6 94.8
H4' C4' C3' H3' 210.1 214.8
C1' O4' C4' C3' 25.2 40.5
C1' O4' C4' H4' 266.2 281.7
C3' C2' C1' O4' 339.2 23.9
O2' C2' C1' O4' 98.5 140.0
O4' C1' C2' H2' 216.9 262.8
C2' C1' O4' N1 124.1 118.9
C2' C1' O4' H1' 241.8 241.1
N1 C1' O4' H1' 117.8 122.2
O4' C1' N1 C2 209.5 57.0
O4' C1' N1 C6 28.7 237.0
C3' O3' PC O2' 5.0 325.2
O3' C3' C4' H4' 329.6 337.5
C4' C3' O3' C2' 112.4 113.5
C4' C3' O3' H3' 236.5 237.2
C2' C3' O3' H3' 124.1 123.7
O3' C3' C2' O2' 35.1 0.5
O3' C3' C2' C1' 152.6 116.6
O3' C3' C2' H2' 276.6 236.7
PC O2' C2' C3' 332.8 336.8
C2' C3' C4' H4' 86.6 94.8
C4' C3' C2' O3' 242.2 243.5
C4' C3' C2' H3' 122.8 119.9
O4' C1' C2' C3' 339.2 23.9
O3' C3' C2' H3' 240.6 236.4
O2' C2' C3' C1' 242.5 243.9
O2' C2' C3' H2' 118.5 123.7
C1' C2' C3' H2' 236.0 239.9
C3' C2' C1' N1 99.9 142.7
C3' C2' C1' H1' 217.5 264.9
H3' C3' C4' H4' 210.1 214.8
C4' C3' H3' O3' 122.0 121.4
C4' C3' H3' C2' 243.3 244.4
O3' C3' H3' C2' 121.3 122.9
H3' C3' C2' O2' 154.5 124.0
H3' C3' C2' C1' 272.0 240.2
H3' C3' C2' H2' 35.9 0.3
O4' C1' C2' O2' 98.5 140.0
O2' C2' C3' H3' 154.5 124.0
C3' C2' O2' C1' 112.6 112.9
C3' C2' O2' H2' 237.0 235.6
C1' C2' O2' H2' 124.4 122.7
O2' C2' C1' N1 219.2 258.8
O2' C2' C1' H1' 336.8 21.0
O4' C1' C2' N1 239.3 241.1
O4' C1' C2' H1' 121.7 118.9
C1' C2' C3' H3' 272.0 240.2
C3' C2' C1' O2' 240.7 243.9
C3' C2' C1' H2' 122.3 121.0
O2' C2' C1' H2' 241.6 237.1
N1 C1' C2' H1' 242.4 237.8
C2' C1' N1 C2 89.2 301.5
C2' C1' N1 C6 268.5 121.5
H2' C2' C3' H3' 35.9 0.3
C3' C2' H2' O2' 122.7 122.5
C3' C2' H2' C1' 243.7 244.0
O2' C2' H2' C1' 121.0 121.6
H2' C2' C1' N1 337.6 21.7
H2' C2' C1' H1' 95.2 143.9
O4' C1' N1 C2' 120.3 115.5
O4' C1' N1 H1' 238.3 237.7
N1 C1' C2' H2' 337.6 21.7
C2' C1' N1 H1' 118.0 122.3
C2 N1 C1' C6 180.7 180.0
C1' N1 C2 O2 357.2 0.0
C1' N1 C2 N3 177.5 180.0
C1' N1 C6 C5 182.0 179.7
C1' N1 C6 H6 2.1 360.0
O4' C1' H1' C2' 241.4 244.5
O4' C1' H1' N1 119.0 122.2
H1' C1' C2' H2' 95.2 143.9
C2' C1' H1' N1 237.6 237.7
H1' C1' N1 C2 331.2 179.3
H1' C1' N1 C6 150.5 359.2
C2 N1 C1' H1' 331.2 179.3
C1' N1 C2 C6 179.3 180.0
C2 N1 C6 C5 1.3 359.7
C2 N1 C6 H6 181.3 180.0
O2 C2 N1 N3 179.7 180.0
N1 C2 N3 C4 0.9 360.0
C6 N1 C1' H1' 150.5 359.2
C1' N1 C6 C2 180.7 180.0
C6 N1 C2 O2 177.9 180.0
C6 N1 C2 N3 358.2 0.0
C4 C5 C6 N1 360.0 0.6
N1 C6 C5 H5 179.9 180.0
C5 C6 N1 H6 180.0 179.7
O2 C2 N1 C6 177.9 180.0
N1 C2 O2 N3 180.3 180.0
O2 C2 N3 C4 181.2 180.0
N3 C2 N1 C6 358.2 0.0
N1 C2 N3 O2 179.7 180.0
C2 N3 C4 N4 180.5 180.0
C2 N3 C4 C5 0.4 0.3
N4 C4 N3 C5 180.2 179.8
N3 C4 N4 H41 180.0 359.9
N3 C4 N4 H42 54.7 179.8
N3 C4 C5 C6 359.2 359.5
N3 C4 C5 H5 179.2 180.1
N3 C4 N4 C5 179.8 180.2
N4 C4 C5 C6 179.0 179.7
N4 C4 C5 H5 359.0 0.3
H41 N4 C4 H42 125.3 180.2
N1 C6 C5 C4 360.0 0.6
N3 C4 C5 N4 180.2 179.8
C5 C4 N4 H41 0.2 179.7
C5 C4 N4 H42 234.9 359.5
C6 C5 C4 H5 180.0 179.4
C4 C5 C6 H6 180.0 180.3
H41 N4 C4 C5 0.2 179.7
C4 N4 H41 H42 234.7 179.8
H42 N4 C4 C5 234.9 359.5
C4 N4 H42 H41 130.0 180.2
N1 C6 C5 H6 180.0 180.3
C4 C5 C6 H5 180.0 180.6
C4 C5 H5 C6 180.0 179.4
H5 C5 C6 H6 359.9 359.7
N1 C6 H6 C5 180.0 179.7
H6 C6 C5 H5 359.9 359.7