PDB Chemical Component CBR

Ideal Model

Chemical Description

Name 5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
Formula C9 H13 Br N3 O7 P
Formal charge 0
Molecular weight 386.093 g/mol
Component type DNA LINKING
Nonstandard Parent Id DC

Chemical features

Atom count 34
Chiral atom count 3
Chiral atoms C4' C1' C3'
Observed leaving atoms OP3 HO3'
Bond count 35
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5-bromo-2'-deoxycytidine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(4-amino-5-bromo-2-oxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1Br)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2
SMILES (CACTVS) NC1=NC(=O)N(C=C1Br)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C=C(C(=NC2=O)N)Br)COP(=O)(O)O)O
InChI descriptor InChI=1/C9H13BrN3O7P/c10-4-2-13(9(15)12-8(4)11)7-1-5(14)6(20-7)3-19-21(16,17)18/h2,5-7,14H,1,3H2,(H2,11,12,15)(H2,16,17,18)/t5-,6+,7+/m0/s1/f/h16-17H,11H2
InChIKey descriptor PLDRCXOBLRYJSZ-PSXLHVPUDU

Status Information

Last modified 2009-01-07
Created 2003-07-16
Release status REL
Replaces C32
Model PDB code 1UHX
Processing site RCSB