PDB Chemical Component CBR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CBR

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
BR C5 1.939 1.857
P OP1 1.481 1.501
P OP2 1.489 1.618
P O5' 1.592 1.619
P OP3   1.616
OP2 HOP2 0.950 0.981
O5' C5' 1.427 1.418
N1 C6 1.371 1.386
N1 C2 1.404 1.414
N1 C1' 1.475 1.434
C6 C5 1.344 1.334
C6 H6 1.103 1.086
C2 O2 1.236 1.232
C2 N3 1.351 1.383
N3 C4 1.336 1.309
C4 N4 1.336 1.377
C4 C5 1.424 1.496
N4 H41 1.021 0.990
N4 H42 1.021 0.991
C2' C1' 1.520 1.520
C2' C3' 1.523 1.511
C2' H2' 1.115 1.097
C2' H2'' 1.115 1.095
C5' C4' 1.510 1.523
C5' H5' 1.114 1.092
C5' H5'' 1.116 1.093
C4' O4' 1.447 1.441
C4' C3' 1.532 1.522
C4' H4' 1.115 1.094
O4' C1' 1.407 1.434
C1' H1' 1.115 1.095
C3' O3' 1.432 1.426
C3' H3' 1.115 1.094
O3' HO3' 0.950 0.973
OP3 HOP3   0.981

Bond Angles for CBR

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
BR C5 C6 121.4 123.3
BR C5 C4 120.6 120.7
OP1 P OP2 119.7 115.3
OP1 P O5' 107.3 115.0
OP1 P OP3   115.0
OP2 P O5' 108.0 103.7
OP2 P OP3   103.3
P OP2 HOP2 119.7 118.9
O5' P OP3   102.9
P O5' C5' 120.4 118.5
P OP3 HOP3   118.9
O5' C5' C4' 110.0 108.9
O5' C5' H5' 112.0 109.0
O5' C5' H5'' 112.0 108.9
C6 N1 C2 120.1 119.5
C6 N1 C1' 121.6 120.2
N1 C6 C5 120.7 122.9
N1 C6 H6 120.7 115.3
C2 N1 C1' 118.3 120.3
N1 C2 O2 118.9 121.1
N1 C2 N3 119.5 118.8
N1 C1' C2' 116.4 112.8
N1 C1' O4' 108.0 109.3
N1 C1' H1' 104.5 107.8
C5 C6 H6 118.6 121.8
C6 C5 C4 117.8 116.0
O2 C2 N3 121.6 120.2
C2 N3 C4 120.0 121.4
N3 C4 N4 118.0 118.8
N3 C4 C5 121.9 121.4
N4 C4 C5 120.1 119.9
C4 N4 H41 118.1 118.0
C4 N4 H42 109.2 117.9
H41 N4 H42 109.0 124.1
C1' C2' C3' 102.6 102.5
C1' C2' H2' 114.8 110.6
C1' C2' H2'' 114.8 111.7
C2' C1' O4' 105.0 107.4
C2' C1' H1' 107.5 111.5
C3' C2' H2' 114.9 109.7
C3' C2' H2'' 114.8 114.1
C2' C3' C4' 104.4 103.1
C2' C3' O3' 112.7 109.7
C2' C3' H3' 110.8 113.2
H2' C2' H2'' 95.7 108.3
C4' C5' H5' 112.1 110.3
C4' C5' H5'' 112.0 110.3
C5' C4' O4' 109.6 107.9
C5' C4' C3' 113.9 112.9
C5' C4' H4' 105.4 109.5
H5' C5' H5'' 98.4 109.3
O4' C4' C3' 106.4 106.2
O4' C4' H4' 113.0 107.9
C4' O4' C1' 108.7 109.3
C3' C4' H4' 108.7 112.2
C4' C3' O3' 109.5 109.9
C4' C3' H3' 113.8 113.5
O4' C1' H1' 115.9 108.0
O3' C3' H3' 105.8 107.4
C3' O3' HO3' 112.6 107.3

Torsion Angles for CBR

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N1 C6 C5 BR 173.7 180.0
BR C5 C6 H6 353.7 0.0
C6 C5 BR C4 185.4 180.0
N3 C4 C5 BR 187.1 180.0
N4 C4 C5 BR 7.8 359.9
OP2 P OP1 O5' 236.6 120.6
OP2 P OP1 OP3   239.9
OP1 P OP2 HOP2 180.0 48.8
O5' P OP1 OP3   119.3
OP1 P O5' C5' 48.7 179.9
OP1 P OP3 HOP3   312.0
OP1 P OP2 O5' 123.0 233.4
OP1 P OP2 OP3   126.3
O5' P OP2 OP3   252.9
OP2 P O5' C5' 179.0 53.2
OP2 P OP3 HOP3   78.5
OP1 P O5' OP2 229.7 126.8
OP1 P O5' OP3   234.2
OP2 P O5' OP3   107.4
O5' P OP2 HOP2 57.0 175.4
O5' P OP3 HOP3   186.2
P O5' C5' C4' 175.4 180.0
P O5' C5' H5' 300.8 300.4
P O5' C5' H5'' 50.2 59.6
OP1 P OP3 OP2   233.5
OP1 P OP3 O5'   125.8
OP2 P OP3 O5'   252.3
OP3 P OP2 HOP2   282.5
OP3 P O5' C5'   305.8
HOP2 OP2 P O5' 57.0 175.4
HOP2 OP2 P OP3   282.5
C5' O5' P OP3   305.8
C4' C5' O5' H5' 234.7 239.6
C4' C5' O5' H5'' 125.3 120.4
O5' C5' C4' O4' 292.7 62.4
O5' C5' C4' C3' 51.8 179.5
O5' C5' C4' H4' 170.8 305.3
H5' C5' O5' H5'' 250.6 240.8
BR C5 C6 N1 173.7 180.0
C2 N1 C6 C1' 180.1 180.0
C6 N1 C2 O2 181.9 179.9
C6 N1 C2 N3 1.4 0.0
C6 N1 C1' C2' 319.0 273.5
C6 N1 C1' O4' 76.7 32.9
C6 N1 C1' H1' 200.7 150.0
C5 C6 N1 H6 180.0 180.0
N1 C6 C5 C4 359.0 0.0
C6 N1 C2 C1' 179.9 180.0
C2 N1 C6 C5 359.4 360.0
C2 N1 C6 H6 179.4 180.0
C2 N1 C1' C2' 138.9 93.5
C2 N1 C1' O4' 256.6 212.9
C2 N1 C1' H1' 20.6 330.0
O2 C2 N1 N3 180.5 179.9
N1 C2 N3 C4 359.5 0.0
C6 N1 C1' C2 180.1 180.0
C1' N1 C6 C5 179.3 180.0
C1' N1 C6 H6 359.3 0.0
C1' N1 C2 O2 2.0 359.9
C1' N1 C2 N3 181.5 180.0
N1 C1' C2' C3' 155.0 147.4
N1 C1' C2' H2' 280.2 30.6
N1 C1' C2' H2'' 29.7 269.9
C2' C1' N1 O4' 242.3 240.6
C2' C1' N1 H1' 118.3 123.5
C4' O4' C1' N1 201.2 228.3
O4' C1' N1 H1' 236.0 242.9
BR C5 C6 C4 174.7 180.0
C5 C6 N1 C2 359.4 360.0
C5 C6 N1 C1' 179.3 180.0
N1 C6 C5 H6 180.0 180.0
N3 C4 C5 C6 1.9 360.0
N4 C4 C5 C6 182.6 179.9
H6 C6 N1 C2 179.4 180.0
H6 C6 N1 C1' 359.3 0.0
N1 C6 H6 C5 180.0 180.0
H6 C6 C5 C4 179.0 180.0
O2 C2 N1 C1' 2.0 359.9
N1 C2 O2 N3 179.5 180.1
O2 C2 N3 C4 178.9 180.1
N3 C2 N1 C1' 181.5 180.0
N1 C2 N3 O2 180.5 179.9
C2 N3 C4 N4 178.2 180.1
C2 N3 C4 C5 358.9 0.0
BR C5 C4 N3 187.1 180.0
C6 C5 C4 N3 1.9 360.0
N4 C4 N3 C5 179.4 180.0
N3 C4 N4 H41 180.0 173.9
N3 C4 N4 H42 54.8 353.9
BR C5 C4 N4 7.8 359.9
C6 C5 C4 N4 182.6 179.9
N3 C4 N4 C5 180.6 180.0
H41 N4 C4 H42 125.2 180.0
BR C5 C4 C6 185.2 180.0
C4 C5 C6 H6 179.0 180.0
N3 C4 C5 N4 179.3 180.0
C5 C4 N4 H41 359.4 353.9
C5 C4 N4 H42 234.1 173.9
H41 N4 C4 C5 359.4 353.9
C4 N4 H41 H42 234.7 180.0
H42 N4 C4 C5 234.1 173.9
C4 N4 H42 H41 130.3 180.0
N1 C1' C2' O4' 119.3 120.5
N1 C1' C2' H1' 243.3 238.6
C3' C2' C1' H2' 234.7 116.9
C3' C2' C1' H2'' 125.3 237.5
C1' C2' C3' C4' 336.1 326.6
C1' C2' C3' O3' 94.9 83.6
C1' C2' C3' H3' 213.2 203.6
H2' C2' C1' H2'' 250.6 120.7
C4' O4' C1' C2' 326.0 351.0
O4' C1' C2' H1' 124.0 118.1
C1' C2' C3' H2' 125.3 242.5
C1' C2' C3' H2'' 234.8 120.8
C3' C2' C1' O4' 35.7 26.9
C3' C2' C1' H1' 271.6 268.8
H2' C2' C3' H2'' 109.5 238.3
C5' C4' C3' C2' 244.1 271.2
O4' C4' C3' C2' 4.9 29.2
C2' C3' C4' H4' 126.9 146.9
C4' C3' C2' O3' 241.2 242.9
C4' C3' C2' H3' 122.9 123.0
O3' C3' C2' H3' 241.7 240.1
C2' C3' O3' HO3' 180.0 120.1
C1' C2' H2' C3' 241.4 112.3
C1' C2' H2' H2'' 120.7 237.3
H2' C2' C1' O4' 161.0 270.0
H2' C2' C1' H1' 36.9 151.9
C3' C2' H2' H2'' 239.3 125.1
H2' C2' C3' C4' 210.8 84.1
H2' C2' C3' O3' 329.6 201.1
H2' C2' C3' H3' 87.9 321.1
C1' C2' H2'' C3' 118.6 244.4
C1' C2' H2'' H2' 239.3 122.0
H2'' C2' C1' O4' 270.4 149.4
H2'' C2' C1' H1' 146.4 31.3
C3' C2' H2'' H2' 120.7 237.5
H2'' C2' C3' C4' 101.3 205.7
H2'' C2' C3' O3' 220.1 322.8
H2'' C2' C3' H3' 338.4 82.7
O5' C5' C4' H5' 125.3 119.6
O5' C5' C4' H5'' 234.7 240.5
C2' C3' C4' C5' 244.1 271.2
H5' C5' C4' H5'' 109.5 120.9
O4' C4' C5' C3' 241.0 242.9
O4' C4' C5' H4' 121.9 117.1
C5' C4' O4' C1' 141.7 108.6
C3' C4' C5' H4' 241.0 234.2
C5' C4' C3' O3' 123.2 154.2
C5' C4' C3' H3' 5.0 34.0
O5' C5' H5' C4' 235.8 240.5
O5' C5' H5' H5'' 117.9 119.0
C4' C5' H5' H5'' 242.1 238.5
H5' C5' C4' O4' 167.5 302.9
H5' C5' C4' C3' 286.5 60.0
H5' C5' C4' H4' 45.5 185.7
O5' C5' H5'' C4' 124.2 119.4
O5' C5' H5'' H5' 242.1 241.0
C4' C5' H5'' H5' 118.0 121.5
H5'' C5' C4' O4' 58.0 181.9
H5'' C5' C4' C3' 177.0 299.0
H5'' C5' C4' H4' 296.1 64.8
N1 C1' O4' C4' 201.2 228.3
C2' C1' O4' C4' 326.0 351.0
C2' C3' C4' O4' 4.9 29.2
O4' C4' C5' H5' 167.5 302.9
O4' C4' C5' H5'' 58.0 181.9
C5' C4' O4' C3' 123.6 121.4
C5' C4' O4' H4' 242.8 241.8
C3' C4' O4' H4' 119.2 120.5
O4' C4' C3' O3' 244.1 272.3
O4' C4' C3' H3' 125.8 152.1
C4' O4' C1' H1' 84.4 111.3
C4' C3' C2' H2' 210.8 84.1
C4' C3' C2' H2'' 101.3 205.7
C2' C3' C4' O3' 120.9 116.9
C2' C3' C4' H3' 239.1 237.2
C3' C4' C5' H5' 286.5 60.0
C3' C4' C5' H5'' 177.0 299.0
C5' C4' C3' O4' 239.1 241.9
C5' C4' C3' H4' 117.1 124.3
O4' C4' C3' H4' 238.0 242.4
C3' C4' O4' C1' 18.2 347.3
O3' C3' C4' H3' 118.2 120.2
C4' C3' O3' HO3' 295.8 232.8
H4' C4' C5' H5' 45.5 185.7
H4' C4' C5' H5'' 296.1 64.8
C5' C4' H4' O4' 119.7 117.1
C5' C4' H4' C3' 237.6 233.8
O4' C4' H4' C3' 117.9 116.7
H4' C4' O4' C1' 259.0 226.8
H4' C4' C3' O3' 6.0 29.9
H4' C4' C3' H3' 247.8 269.7
N1 C1' O4' C2' 235.2 237.3
N1 C1' O4' H1' 116.8 117.0
O4' C1' C2' C3' 35.7 26.9
O4' C1' C2' H2' 161.0 270.0
O4' C1' C2' H2'' 270.4 149.4
C2' C1' O4' H1' 241.5 239.7
C1' O4' C4' C3' 18.2 347.3
C1' O4' C4' H4' 259.0 226.8
N1 C1' H1' C2' 124.2 124.3
N1 C1' H1' O4' 241.3 242.0
H1' C1' C2' C3' 271.6 268.8
H1' C1' C2' H2' 36.9 151.9
H1' C1' C2' H2'' 146.4 31.3
C2' C1' H1' O4' 117.1 117.7
O3' C3' C2' H2' 329.6 201.1
O3' C3' C2' H2'' 220.1 322.8
C2' C3' O3' C4' 244.3 247.3
C2' C3' O3' H3' 121.2 123.4
O3' C3' C4' H4' 6.0 29.9
C4' C3' O3' H3' 236.9 236.1
H3' C3' C2' H2' 87.9 321.1
H3' C3' C2' H2'' 338.4 82.7
C2' C3' H3' C4' 117.3 117.1
C2' C3' H3' O3' 237.6 238.7
H3' C3' C4' H4' 247.8 269.7
C4' C3' H3' O3' 120.3 121.7
H3' C3' O3' HO3' 58.9 356.6
HO3' O3' C3' H3' 58.9 356.6