PDB Chemical Component CBR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CBR
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
BR |
C5 |
1.939 |
1.857 |
P |
OP1 |
1.481 |
1.501 |
P |
OP2 |
1.489 |
1.618 |
P |
O5' |
1.592 |
1.619 |
P |
OP3 |
|
1.616 |
OP2 |
HOP2 |
0.950 |
0.981 |
O5' |
C5' |
1.427 |
1.418 |
N1 |
C6 |
1.371 |
1.386 |
N1 |
C2 |
1.404 |
1.414 |
N1 |
C1' |
1.475 |
1.434 |
C6 |
C5 |
1.344 |
1.334 |
C6 |
H6 |
1.103 |
1.086 |
C2 |
O2 |
1.236 |
1.232 |
C2 |
N3 |
1.351 |
1.383 |
N3 |
C4 |
1.336 |
1.309 |
C4 |
N4 |
1.336 |
1.377 |
C4 |
C5 |
1.424 |
1.496 |
N4 |
H41 |
1.021 |
0.990 |
N4 |
H42 |
1.021 |
0.991 |
C2' |
C1' |
1.520 |
1.520 |
C2' |
C3' |
1.523 |
1.511 |
C2' |
H2' |
1.115 |
1.097 |
C2' |
H2'' |
1.115 |
1.095 |
C5' |
C4' |
1.510 |
1.523 |
C5' |
H5' |
1.114 |
1.092 |
C5' |
H5'' |
1.116 |
1.093 |
C4' |
O4' |
1.447 |
1.441 |
C4' |
C3' |
1.532 |
1.522 |
C4' |
H4' |
1.115 |
1.094 |
O4' |
C1' |
1.407 |
1.434 |
C1' |
H1' |
1.115 |
1.095 |
C3' |
O3' |
1.432 |
1.426 |
C3' |
H3' |
1.115 |
1.094 |
O3' |
HO3' |
0.950 |
0.973 |
OP3 |
HOP3 |
|
0.981 |
Bond Angles for CBR
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
BR |
C5 |
C6 |
121.4 |
123.3 |
BR |
C5 |
C4 |
120.6 |
120.7 |
OP1 |
P |
OP2 |
119.7 |
115.3 |
OP1 |
P |
O5' |
107.3 |
115.0 |
OP1 |
P |
OP3 |
|
115.0 |
OP2 |
P |
O5' |
108.0 |
103.7 |
OP2 |
P |
OP3 |
|
103.3 |
P |
OP2 |
HOP2 |
119.7 |
118.9 |
O5' |
P |
OP3 |
|
102.9 |
P |
O5' |
C5' |
120.4 |
118.5 |
P |
OP3 |
HOP3 |
|
118.9 |
O5' |
C5' |
C4' |
110.0 |
108.9 |
O5' |
C5' |
H5' |
112.0 |
109.0 |
O5' |
C5' |
H5'' |
112.0 |
108.9 |
C6 |
N1 |
C2 |
120.1 |
119.5 |
C6 |
N1 |
C1' |
121.6 |
120.2 |
N1 |
C6 |
C5 |
120.7 |
122.9 |
N1 |
C6 |
H6 |
120.7 |
115.3 |
C2 |
N1 |
C1' |
118.3 |
120.3 |
N1 |
C2 |
O2 |
118.9 |
121.1 |
N1 |
C2 |
N3 |
119.5 |
118.8 |
N1 |
C1' |
C2' |
116.4 |
112.8 |
N1 |
C1' |
O4' |
108.0 |
109.3 |
N1 |
C1' |
H1' |
104.5 |
107.8 |
C5 |
C6 |
H6 |
118.6 |
121.8 |
C6 |
C5 |
C4 |
117.8 |
116.0 |
O2 |
C2 |
N3 |
121.6 |
120.2 |
C2 |
N3 |
C4 |
120.0 |
121.4 |
N3 |
C4 |
N4 |
118.0 |
118.8 |
N3 |
C4 |
C5 |
121.9 |
121.4 |
N4 |
C4 |
C5 |
120.1 |
119.9 |
C4 |
N4 |
H41 |
118.1 |
118.0 |
C4 |
N4 |
H42 |
109.2 |
117.9 |
H41 |
N4 |
H42 |
109.0 |
124.1 |
C1' |
C2' |
C3' |
102.6 |
102.5 |
C1' |
C2' |
H2' |
114.8 |
110.6 |
C1' |
C2' |
H2'' |
114.8 |
111.7 |
C2' |
C1' |
O4' |
105.0 |
107.4 |
C2' |
C1' |
H1' |
107.5 |
111.5 |
C3' |
C2' |
H2' |
114.9 |
109.7 |
C3' |
C2' |
H2'' |
114.8 |
114.1 |
C2' |
C3' |
C4' |
104.4 |
103.1 |
C2' |
C3' |
O3' |
112.7 |
109.7 |
C2' |
C3' |
H3' |
110.8 |
113.2 |
H2' |
C2' |
H2'' |
95.7 |
108.3 |
C4' |
C5' |
H5' |
112.1 |
110.3 |
C4' |
C5' |
H5'' |
112.0 |
110.3 |
C5' |
C4' |
O4' |
109.6 |
107.9 |
C5' |
C4' |
C3' |
113.9 |
112.9 |
C5' |
C4' |
H4' |
105.4 |
109.5 |
H5' |
C5' |
H5'' |
98.4 |
109.3 |
O4' |
C4' |
C3' |
106.4 |
106.2 |
O4' |
C4' |
H4' |
113.0 |
107.9 |
C4' |
O4' |
C1' |
108.7 |
109.3 |
C3' |
C4' |
H4' |
108.7 |
112.2 |
C4' |
C3' |
O3' |
109.5 |
109.9 |
C4' |
C3' |
H3' |
113.8 |
113.5 |
O4' |
C1' |
H1' |
115.9 |
108.0 |
O3' |
C3' |
H3' |
105.8 |
107.4 |
C3' |
O3' |
HO3' |
112.6 |
107.3 |
Torsion Angles for CBR
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N1 |
C6 |
C5 |
BR |
173.7 |
180.0 |
BR |
C5 |
C6 |
H6 |
353.7 |
0.0 |
C6 |
C5 |
BR |
C4 |
185.4 |
180.0 |
N3 |
C4 |
C5 |
BR |
187.1 |
180.0 |
N4 |
C4 |
C5 |
BR |
7.8 |
359.9 |
OP2 |
P |
OP1 |
O5' |
236.6 |
120.6 |
OP2 |
P |
OP1 |
OP3 |
|
239.9 |
OP1 |
P |
OP2 |
HOP2 |
180.0 |
48.8 |
O5' |
P |
OP1 |
OP3 |
|
119.3 |
OP1 |
P |
O5' |
C5' |
48.7 |
179.9 |
OP1 |
P |
OP3 |
HOP3 |
|
312.0 |
OP1 |
P |
OP2 |
O5' |
123.0 |
233.4 |
OP1 |
P |
OP2 |
OP3 |
|
126.3 |
O5' |
P |
OP2 |
OP3 |
|
252.9 |
OP2 |
P |
O5' |
C5' |
179.0 |
53.2 |
OP2 |
P |
OP3 |
HOP3 |
|
78.5 |
OP1 |
P |
O5' |
OP2 |
229.7 |
126.8 |
OP1 |
P |
O5' |
OP3 |
|
234.2 |
OP2 |
P |
O5' |
OP3 |
|
107.4 |
O5' |
P |
OP2 |
HOP2 |
57.0 |
175.4 |
O5' |
P |
OP3 |
HOP3 |
|
186.2 |
P |
O5' |
C5' |
C4' |
175.4 |
180.0 |
P |
O5' |
C5' |
H5' |
300.8 |
300.4 |
P |
O5' |
C5' |
H5'' |
50.2 |
59.6 |
OP1 |
P |
OP3 |
OP2 |
|
233.5 |
OP1 |
P |
OP3 |
O5' |
|
125.8 |
OP2 |
P |
OP3 |
O5' |
|
252.3 |
OP3 |
P |
OP2 |
HOP2 |
|
282.5 |
OP3 |
P |
O5' |
C5' |
|
305.8 |
HOP2 |
OP2 |
P |
O5' |
57.0 |
175.4 |
HOP2 |
OP2 |
P |
OP3 |
|
282.5 |
C5' |
O5' |
P |
OP3 |
|
305.8 |
C4' |
C5' |
O5' |
H5' |
234.7 |
239.6 |
C4' |
C5' |
O5' |
H5'' |
125.3 |
120.4 |
O5' |
C5' |
C4' |
O4' |
292.7 |
62.4 |
O5' |
C5' |
C4' |
C3' |
51.8 |
179.5 |
O5' |
C5' |
C4' |
H4' |
170.8 |
305.3 |
H5' |
C5' |
O5' |
H5'' |
250.6 |
240.8 |
BR |
C5 |
C6 |
N1 |
173.7 |
180.0 |
C2 |
N1 |
C6 |
C1' |
180.1 |
180.0 |
C6 |
N1 |
C2 |
O2 |
181.9 |
179.9 |
C6 |
N1 |
C2 |
N3 |
1.4 |
0.0 |
C6 |
N1 |
C1' |
C2' |
319.0 |
273.5 |
C6 |
N1 |
C1' |
O4' |
76.7 |
32.9 |
C6 |
N1 |
C1' |
H1' |
200.7 |
150.0 |
C5 |
C6 |
N1 |
H6 |
180.0 |
180.0 |
N1 |
C6 |
C5 |
C4 |
359.0 |
0.0 |
C6 |
N1 |
C2 |
C1' |
179.9 |
180.0 |
C2 |
N1 |
C6 |
C5 |
359.4 |
360.0 |
C2 |
N1 |
C6 |
H6 |
179.4 |
180.0 |
C2 |
N1 |
C1' |
C2' |
138.9 |
93.5 |
C2 |
N1 |
C1' |
O4' |
256.6 |
212.9 |
C2 |
N1 |
C1' |
H1' |
20.6 |
330.0 |
O2 |
C2 |
N1 |
N3 |
180.5 |
179.9 |
N1 |
C2 |
N3 |
C4 |
359.5 |
0.0 |
C6 |
N1 |
C1' |
C2 |
180.1 |
180.0 |
C1' |
N1 |
C6 |
C5 |
179.3 |
180.0 |
C1' |
N1 |
C6 |
H6 |
359.3 |
0.0 |
C1' |
N1 |
C2 |
O2 |
2.0 |
359.9 |
C1' |
N1 |
C2 |
N3 |
181.5 |
180.0 |
N1 |
C1' |
C2' |
C3' |
155.0 |
147.4 |
N1 |
C1' |
C2' |
H2' |
280.2 |
30.6 |
N1 |
C1' |
C2' |
H2'' |
29.7 |
269.9 |
C2' |
C1' |
N1 |
O4' |
242.3 |
240.6 |
C2' |
C1' |
N1 |
H1' |
118.3 |
123.5 |
C4' |
O4' |
C1' |
N1 |
201.2 |
228.3 |
O4' |
C1' |
N1 |
H1' |
236.0 |
242.9 |
BR |
C5 |
C6 |
C4 |
174.7 |
180.0 |
C5 |
C6 |
N1 |
C2 |
359.4 |
360.0 |
C5 |
C6 |
N1 |
C1' |
179.3 |
180.0 |
N1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
N3 |
C4 |
C5 |
C6 |
1.9 |
360.0 |
N4 |
C4 |
C5 |
C6 |
182.6 |
179.9 |
H6 |
C6 |
N1 |
C2 |
179.4 |
180.0 |
H6 |
C6 |
N1 |
C1' |
359.3 |
0.0 |
N1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
H6 |
C6 |
C5 |
C4 |
179.0 |
180.0 |
O2 |
C2 |
N1 |
C1' |
2.0 |
359.9 |
N1 |
C2 |
O2 |
N3 |
179.5 |
180.1 |
O2 |
C2 |
N3 |
C4 |
178.9 |
180.1 |
N3 |
C2 |
N1 |
C1' |
181.5 |
180.0 |
N1 |
C2 |
N3 |
O2 |
180.5 |
179.9 |
C2 |
N3 |
C4 |
N4 |
178.2 |
180.1 |
C2 |
N3 |
C4 |
C5 |
358.9 |
0.0 |
BR |
C5 |
C4 |
N3 |
187.1 |
180.0 |
C6 |
C5 |
C4 |
N3 |
1.9 |
360.0 |
N4 |
C4 |
N3 |
C5 |
179.4 |
180.0 |
N3 |
C4 |
N4 |
H41 |
180.0 |
173.9 |
N3 |
C4 |
N4 |
H42 |
54.8 |
353.9 |
BR |
C5 |
C4 |
N4 |
7.8 |
359.9 |
C6 |
C5 |
C4 |
N4 |
182.6 |
179.9 |
N3 |
C4 |
N4 |
C5 |
180.6 |
180.0 |
H41 |
N4 |
C4 |
H42 |
125.2 |
180.0 |
BR |
C5 |
C4 |
C6 |
185.2 |
180.0 |
C4 |
C5 |
C6 |
H6 |
179.0 |
180.0 |
N3 |
C4 |
C5 |
N4 |
179.3 |
180.0 |
C5 |
C4 |
N4 |
H41 |
359.4 |
353.9 |
C5 |
C4 |
N4 |
H42 |
234.1 |
173.9 |
H41 |
N4 |
C4 |
C5 |
359.4 |
353.9 |
C4 |
N4 |
H41 |
H42 |
234.7 |
180.0 |
H42 |
N4 |
C4 |
C5 |
234.1 |
173.9 |
C4 |
N4 |
H42 |
H41 |
130.3 |
180.0 |
N1 |
C1' |
C2' |
O4' |
119.3 |
120.5 |
N1 |
C1' |
C2' |
H1' |
243.3 |
238.6 |
C3' |
C2' |
C1' |
H2' |
234.7 |
116.9 |
C3' |
C2' |
C1' |
H2'' |
125.3 |
237.5 |
C1' |
C2' |
C3' |
C4' |
336.1 |
326.6 |
C1' |
C2' |
C3' |
O3' |
94.9 |
83.6 |
C1' |
C2' |
C3' |
H3' |
213.2 |
203.6 |
H2' |
C2' |
C1' |
H2'' |
250.6 |
120.7 |
C4' |
O4' |
C1' |
C2' |
326.0 |
351.0 |
O4' |
C1' |
C2' |
H1' |
124.0 |
118.1 |
C1' |
C2' |
C3' |
H2' |
125.3 |
242.5 |
C1' |
C2' |
C3' |
H2'' |
234.8 |
120.8 |
C3' |
C2' |
C1' |
O4' |
35.7 |
26.9 |
C3' |
C2' |
C1' |
H1' |
271.6 |
268.8 |
H2' |
C2' |
C3' |
H2'' |
109.5 |
238.3 |
C5' |
C4' |
C3' |
C2' |
244.1 |
271.2 |
O4' |
C4' |
C3' |
C2' |
4.9 |
29.2 |
C2' |
C3' |
C4' |
H4' |
126.9 |
146.9 |
C4' |
C3' |
C2' |
O3' |
241.2 |
242.9 |
C4' |
C3' |
C2' |
H3' |
122.9 |
123.0 |
O3' |
C3' |
C2' |
H3' |
241.7 |
240.1 |
C2' |
C3' |
O3' |
HO3' |
180.0 |
120.1 |
C1' |
C2' |
H2' |
C3' |
241.4 |
112.3 |
C1' |
C2' |
H2' |
H2'' |
120.7 |
237.3 |
H2' |
C2' |
C1' |
O4' |
161.0 |
270.0 |
H2' |
C2' |
C1' |
H1' |
36.9 |
151.9 |
C3' |
C2' |
H2' |
H2'' |
239.3 |
125.1 |
H2' |
C2' |
C3' |
C4' |
210.8 |
84.1 |
H2' |
C2' |
C3' |
O3' |
329.6 |
201.1 |
H2' |
C2' |
C3' |
H3' |
87.9 |
321.1 |
C1' |
C2' |
H2'' |
C3' |
118.6 |
244.4 |
C1' |
C2' |
H2'' |
H2' |
239.3 |
122.0 |
H2'' |
C2' |
C1' |
O4' |
270.4 |
149.4 |
H2'' |
C2' |
C1' |
H1' |
146.4 |
31.3 |
C3' |
C2' |
H2'' |
H2' |
120.7 |
237.5 |
H2'' |
C2' |
C3' |
C4' |
101.3 |
205.7 |
H2'' |
C2' |
C3' |
O3' |
220.1 |
322.8 |
H2'' |
C2' |
C3' |
H3' |
338.4 |
82.7 |
O5' |
C5' |
C4' |
H5' |
125.3 |
119.6 |
O5' |
C5' |
C4' |
H5'' |
234.7 |
240.5 |
C2' |
C3' |
C4' |
C5' |
244.1 |
271.2 |
H5' |
C5' |
C4' |
H5'' |
109.5 |
120.9 |
O4' |
C4' |
C5' |
C3' |
241.0 |
242.9 |
O4' |
C4' |
C5' |
H4' |
121.9 |
117.1 |
C5' |
C4' |
O4' |
C1' |
141.7 |
108.6 |
C3' |
C4' |
C5' |
H4' |
241.0 |
234.2 |
C5' |
C4' |
C3' |
O3' |
123.2 |
154.2 |
C5' |
C4' |
C3' |
H3' |
5.0 |
34.0 |
O5' |
C5' |
H5' |
C4' |
235.8 |
240.5 |
O5' |
C5' |
H5' |
H5'' |
117.9 |
119.0 |
C4' |
C5' |
H5' |
H5'' |
242.1 |
238.5 |
H5' |
C5' |
C4' |
O4' |
167.5 |
302.9 |
H5' |
C5' |
C4' |
C3' |
286.5 |
60.0 |
H5' |
C5' |
C4' |
H4' |
45.5 |
185.7 |
O5' |
C5' |
H5'' |
C4' |
124.2 |
119.4 |
O5' |
C5' |
H5'' |
H5' |
242.1 |
241.0 |
C4' |
C5' |
H5'' |
H5' |
118.0 |
121.5 |
H5'' |
C5' |
C4' |
O4' |
58.0 |
181.9 |
H5'' |
C5' |
C4' |
C3' |
177.0 |
299.0 |
H5'' |
C5' |
C4' |
H4' |
296.1 |
64.8 |
N1 |
C1' |
O4' |
C4' |
201.2 |
228.3 |
C2' |
C1' |
O4' |
C4' |
326.0 |
351.0 |
C2' |
C3' |
C4' |
O4' |
4.9 |
29.2 |
O4' |
C4' |
C5' |
H5' |
167.5 |
302.9 |
O4' |
C4' |
C5' |
H5'' |
58.0 |
181.9 |
C5' |
C4' |
O4' |
C3' |
123.6 |
121.4 |
C5' |
C4' |
O4' |
H4' |
242.8 |
241.8 |
C3' |
C4' |
O4' |
H4' |
119.2 |
120.5 |
O4' |
C4' |
C3' |
O3' |
244.1 |
272.3 |
O4' |
C4' |
C3' |
H3' |
125.8 |
152.1 |
C4' |
O4' |
C1' |
H1' |
84.4 |
111.3 |
C4' |
C3' |
C2' |
H2' |
210.8 |
84.1 |
C4' |
C3' |
C2' |
H2'' |
101.3 |
205.7 |
C2' |
C3' |
C4' |
O3' |
120.9 |
116.9 |
C2' |
C3' |
C4' |
H3' |
239.1 |
237.2 |
C3' |
C4' |
C5' |
H5' |
286.5 |
60.0 |
C3' |
C4' |
C5' |
H5'' |
177.0 |
299.0 |
C5' |
C4' |
C3' |
O4' |
239.1 |
241.9 |
C5' |
C4' |
C3' |
H4' |
117.1 |
124.3 |
O4' |
C4' |
C3' |
H4' |
238.0 |
242.4 |
C3' |
C4' |
O4' |
C1' |
18.2 |
347.3 |
O3' |
C3' |
C4' |
H3' |
118.2 |
120.2 |
C4' |
C3' |
O3' |
HO3' |
295.8 |
232.8 |
H4' |
C4' |
C5' |
H5' |
45.5 |
185.7 |
H4' |
C4' |
C5' |
H5'' |
296.1 |
64.8 |
C5' |
C4' |
H4' |
O4' |
119.7 |
117.1 |
C5' |
C4' |
H4' |
C3' |
237.6 |
233.8 |
O4' |
C4' |
H4' |
C3' |
117.9 |
116.7 |
H4' |
C4' |
O4' |
C1' |
259.0 |
226.8 |
H4' |
C4' |
C3' |
O3' |
6.0 |
29.9 |
H4' |
C4' |
C3' |
H3' |
247.8 |
269.7 |
N1 |
C1' |
O4' |
C2' |
235.2 |
237.3 |
N1 |
C1' |
O4' |
H1' |
116.8 |
117.0 |
O4' |
C1' |
C2' |
C3' |
35.7 |
26.9 |
O4' |
C1' |
C2' |
H2' |
161.0 |
270.0 |
O4' |
C1' |
C2' |
H2'' |
270.4 |
149.4 |
C2' |
C1' |
O4' |
H1' |
241.5 |
239.7 |
C1' |
O4' |
C4' |
C3' |
18.2 |
347.3 |
C1' |
O4' |
C4' |
H4' |
259.0 |
226.8 |
N1 |
C1' |
H1' |
C2' |
124.2 |
124.3 |
N1 |
C1' |
H1' |
O4' |
241.3 |
242.0 |
H1' |
C1' |
C2' |
C3' |
271.6 |
268.8 |
H1' |
C1' |
C2' |
H2' |
36.9 |
151.9 |
H1' |
C1' |
C2' |
H2'' |
146.4 |
31.3 |
C2' |
C1' |
H1' |
O4' |
117.1 |
117.7 |
O3' |
C3' |
C2' |
H2' |
329.6 |
201.1 |
O3' |
C3' |
C2' |
H2'' |
220.1 |
322.8 |
C2' |
C3' |
O3' |
C4' |
244.3 |
247.3 |
C2' |
C3' |
O3' |
H3' |
121.2 |
123.4 |
O3' |
C3' |
C4' |
H4' |
6.0 |
29.9 |
C4' |
C3' |
O3' |
H3' |
236.9 |
236.1 |
H3' |
C3' |
C2' |
H2' |
87.9 |
321.1 |
H3' |
C3' |
C2' |
H2'' |
338.4 |
82.7 |
C2' |
C3' |
H3' |
C4' |
117.3 |
117.1 |
C2' |
C3' |
H3' |
O3' |
237.6 |
238.7 |
H3' |
C3' |
C4' |
H4' |
247.8 |
269.7 |
C4' |
C3' |
H3' |
O3' |
120.3 |
121.7 |
H3' |
C3' |
O3' |
HO3' |
58.9 |
356.6 |
HO3' |
O3' |
C3' |
H3' |
58.9 |
356.6 |