PDB Chemical Component C49

Ideal Model

Chemical Description

Name 4-THIO,5-FLUORO,5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
Formula C10 H15 F N3 O7 P S
Formal charge 0
Molecular weight 371.279 g/mol
Component type DNA LINKING
Nonstandard Parent Id DC

Chemical features

Atom count 38
Chiral atom count 4
Chiral atoms C4' C3' C1' C5
Observed leaving atoms O3P
Bond count 39
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-5-fluoro-5-methyl-6-thioxocytidine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S)-5-[(5R)-5-fluoro-4-imino-5-methyl-2-oxo-6-sulfanylidene-1,3-diazinan-1-yl]-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) C[C@@]1(F)C(=N)NC(=O)N([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C1=S
SMILES (CACTVS) C[C]1(F)C(=N)NC(=O)N([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C1=S
Stereo SMILES (OpenEye) [H]/N=C/1\[C@@](C(=S)N(C(=O)N1)C2C[C@@H]([C@H](O2)COP(=O)(O)O)O)(C)F
InChI descriptor InChI=1S/C10H15FN3O7PS/c1-10(11)7(12)13-9(16)14(8(10)23)6-2-4(15)5(21-6)3-20-22(17,18)19/h4-6,15H,2-3H2,1H3,(H2,12,13,16)(H2,17,18,19)/t4-,5+,6+,10+/m0/s1
InChIKey descriptor YTBJQSMBUHMWBV-AVAJSQPUSA-N

Status Information

Last modified 2011-06-04
Created 1995-09-15
Release status REL
Model PDB code 1DCT
Processing site RCSB