PDB Chemical Component C49

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for C49

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P O1P 1.468 1.500
P O2P 1.471 1.617
P O3P 1.583 1.617
P O5' 1.609 1.619
O2P H2P 0.950 0.981
O3P H3P 0.950 0.981
O5' C5' 1.443 1.416
C5' C4' 1.513 1.518
C5' H5'1 1.115 1.091
C5' H5'2 1.115 1.091
C4' O4' 1.409 1.437
C4' C3' 1.504 1.520
C4' H4' 1.115 1.096
O4' C1' 1.470 1.437
C3' O3' 1.382 1.412
C3' C2' 1.503 1.510
C3' H3' 1.115 1.096
O3' HA 0.950 0.970
C2' C1' 1.489 1.518
C2' H2'1 1.115 1.094
C2' H2'2 1.115 1.098
C1' N1 1.457 1.434
C1' H1' 1.115 1.094
N1 C2 1.374 1.417
N1 C6 1.458 1.411
C2 O2 1.233 1.234
C2 N3 1.360 1.392
N3 C4 1.345 1.369
N3 H3 1.020 1.016
C4 N4 1.324 1.292
C4 C5 1.459 1.502
C5 C6 1.424 1.528
C5 CM5 1.430 1.535
C5 F 1.328 1.369
C6 SG 1.781 1.691
CM5 HM51 1.115 1.094
CM5 HM52 1.115 1.093
CM5 HM53 1.115 1.095
HN1 N4 1.000 1.025

Bond Angles for C49

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1P P O2P 121.1 115.3
O1P P O3P 111.8 115.0
O1P P O5' 105.6 115.0
O2P P O3P 103.3 103.3
O2P P O5' 111.4 103.7
P O2P H2P 121.0 119.0
O3P P O5' 102.3 102.9
P O3P H3P 111.8 118.9
P O5' C5' 123.8 118.5
O5' C5' C4' 106.4 108.7
O5' C5' H5'1 113.3 109.3
O5' C5' H5'2 113.4 109.2
C4' C5' H5'1 113.3 110.0
C4' C5' H5'2 113.3 110.0
C5' C4' O4' 109.4 109.8
C5' C4' C3' 113.0 113.4
C5' C4' H4' 105.5 108.7
H5'1 C5' H5'2 97.1 109.6
O4' C4' C3' 117.1 105.8
O4' C4' H4' 105.4 108.0
C4' O4' C1' 97.3 108.4
C3' C4' H4' 105.4 111.1
C4' C3' O3' 109.2 111.5
C4' C3' C2' 96.7 101.3
C4' C3' H3' 112.6 111.6
O4' C1' C2' 109.9 107.1
O4' C1' N1 127.6 109.5
O4' C1' H1' 91.7 107.8
O3' C3' C2' 112.3 112.4
O3' C3' H3' 112.5 109.4
C3' O3' HA 109.2 106.5
C2' C3' H3' 112.5 110.5
C3' C2' C1' 99.6 101.8
C3' C2' H2'1 116.0 113.1
C3' C2' H2'2 116.0 110.4
C1' C2' H2'1 116.0 112.9
C1' C2' H2'2 116.0 111.9
C2' C1' N1 122.2 113.0
C2' C1' H1' 91.7 111.5
H2'1 C2' H2'2 94.4 106.8
N1 C1' H1' 91.7 107.9
C1' N1 C2 123.2 116.1
C1' N1 C6 116.8 119.7
C2 N1 C6 119.9 124.2
N1 C2 O2 124.1 124.5
N1 C2 N3 116.3 115.3
N1 C6 C5 119.1 115.0
N1 C6 SG 114.4 125.9
O2 C2 N3 119.6 120.2
C2 N3 C4 126.5 126.5
C2 N3 H3 116.8 116.6
C4 N3 H3 116.8 116.9
N3 C4 N4 123.1 120.7
N3 C4 C5 118.3 116.5
N4 C4 C5 118.6 122.7
C4 C5 C6 114.7 113.4
C4 C5 CM5 112.1 107.4
C4 C5 F 108.2 108.9
C6 C5 CM5 113.2 108.8
C6 C5 F 104.0 111.2
C5 C6 SG 109.8 119.0
CM5 C5 F 103.5 106.8
C5 CM5 HM51 113.2 110.5
C5 CM5 HM52 110.9 110.6
C5 CM5 HM53 110.9 110.5
HM51 CM5 HM52 110.8 108.4
HM51 CM5 HM53 110.9 108.3
HM52 CM5 HM53 99.5 108.4

Torsion Angles for C49

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2P P O1P O3P 238.0 239.9
O2P P O1P O5' 127.6 120.6
O1P P O2P H2P 180.0 48.8
O3P P O1P O5' 249.5 240.7
O1P P O3P H3P 180.0 312.0
O1P P O5' C5' 202.0 180.0
O1P P O2P O3P 125.9 126.3
O1P P O2P O5' 235.1 233.4
O3P P O2P O5' 109.1 107.1
O2P P O3P H3P 311.7 78.5
O2P P O5' C5' 68.9 53.2
O1P P O3P O2P 228.3 233.5
O1P P O3P O5' 112.5 125.8
O2P P O3P O5' 244.2 252.3
O3P P O2P H2P 54.0 282.4
O3P P O5' C5' 319.1 305.8
O1P P O5' O2P 133.2 126.8
O1P P O5' O3P 242.9 234.1
O2P P O5' O3P 109.8 107.4
O5' P O2P H2P 304.9 175.3
O5' P O3P H3P 67.4 186.2
P O5' C5' C4' 162.2 180.0
P O5' C5' H5'1 37.0 300.0
P O5' C5' H5'2 287.5 60.0
H2P O2P P O3P 54.0 282.4
H2P O2P P O5' 304.9 175.3
H3P O3P P O5' 67.4 186.2
C4' C5' O5' H5'1 125.2 239.9
C4' C5' O5' H5'2 234.7 120.0
O5' C5' C4' O4' 29.6 61.5
O5' C5' C4' C3' 161.9 179.5
O5' C5' C4' H4' 276.6 303.6
H5'1 C5' O5' H5'2 109.5 240.1
O5' C5' C4' H5'1 234.8 119.6
O5' C5' C4' H5'2 125.3 240.5
H5'1 C5' C4' H5'2 250.5 120.9
O4' C4' C5' C3' 227.6 241.9
O4' C4' C5' H4' 113.0 117.9
C5' C4' O4' C1' 132.2 141.0
C3' C4' C5' H4' 245.3 235.9
C5' C4' C3' O3' 87.6 84.2
C5' C4' C3' C2' 204.0 203.9
C5' C4' C3' H3' 321.8 321.5
O5' C5' H5'1 C4' 121.4 240.8
O5' C5' H5'1 H5'2 240.7 119.7
C4' C5' H5'1 H5'2 119.3 238.9
H5'1 C5' C4' O4' 154.8 301.9
H5'1 C5' C4' C3' 287.2 59.9
H5'1 C5' C4' H4' 41.8 184.0
O5' C5' H5'2 C4' 238.5 119.2
O5' C5' H5'2 H5'1 119.3 240.3
C4' C5' H5'2 H5'1 240.7 121.1
H5'2 C5' C4' O4' 264.3 181.0
H5'2 C5' C4' C3' 36.6 299.0
H5'2 C5' C4' H4' 151.3 63.1
O4' C4' C5' H5'1 154.8 301.9
O4' C4' C5' H5'2 264.3 181.0
C5' C4' O4' C3' 130.2 122.7
C5' C4' O4' H4' 247.0 241.7
C3' C4' O4' H4' 116.8 119.0
O4' C4' C3' O3' 216.1 204.5
O4' C4' C3' C2' 332.5 324.3
O4' C4' C3' H3' 90.3 81.8
C4' O4' C1' C2' 26.1 6.8
C4' O4' C1' N1 212.1 129.5
C4' O4' C1' H1' 118.5 246.6
C3' C4' C5' H5'1 287.2 59.9
C3' C4' C5' H5'2 36.6 299.0
C5' C4' C3' O4' 231.5 239.7
C5' C4' C3' H4' 114.7 122.7
O4' C4' C3' H4' 243.2 243.1
C3' C4' O4' C1' 2.0 18.3
O3' C3' C4' C2' 243.5 240.2
O3' C3' C4' H3' 125.8 122.7
C4' C3' O3' HA 180.0 192.1
C2' C3' C4' H3' 242.2 242.4
C4' C3' C2' C1' 38.7 38.3
C4' C3' C2' H2'1 273.4 159.7
C4' C3' C2' H2'2 163.9 279.3
H4' C4' C5' H5'1 41.8 184.0
H4' C4' C5' H5'2 151.3 63.1
C5' C4' H4' O4' 115.7 119.0
C5' C4' H4' C3' 240.2 234.6
O4' C4' H4' C3' 124.5 115.6
H4' C4' O4' C1' 245.2 259.3
H4' C4' C3' O3' 332.9 321.4
H4' C4' C3' C2' 89.3 81.2
H4' C4' C3' H3' 207.1 198.8
C1' O4' C4' C3' 2.0 18.3
C1' O4' C4' H4' 245.2 259.3
C3' C2' C1' O4' 316.0 331.1
O4' C1' C2' H2'1 81.3 209.5
O4' C1' C2' H2'2 190.7 89.0
C2' C1' O4' N1 174.0 237.2
C2' C1' O4' H1' 267.5 120.1
N1 C1' O4' H1' 93.5 242.9
O4' C1' N1 C2 323.1 329.5
O4' C1' N1 C6 140.7 147.0
O3' C3' C4' H4' 332.9 321.4
C4' C3' O3' C2' 106.0 112.9
C4' C3' O3' H3' 234.2 236.0
C2' C3' O3' H3' 128.2 123.1
O3' C3' C2' C1' 152.7 157.4
O3' C3' C2' H2'1 27.4 278.8
O3' C3' C2' H2'2 277.9 38.4
C2' C3' C4' H4' 89.3 81.2
C4' C3' C2' O3' 246.0 240.9
C4' C3' C2' H3' 117.8 118.4
O4' C1' C2' C3' 316.0 331.1
O3' C3' C2' H3' 231.8 237.5
C2' C3' O3' HA 74.0 79.2
C1' C2' C3' H2'1 125.2 238.5
C1' C2' C3' H2'2 234.7 118.9
C3' C2' C1' N1 130.4 210.6
C3' C2' C1' H1' 223.5 88.9
H2'1 C2' C3' H2'2 109.5 240.4
H3' C3' C4' H4' 207.1 198.8
C4' C3' H3' O3' 124.0 123.9
C4' C3' H3' C2' 252.0 248.1
O3' C3' H3' C2' 128.1 124.3
H3' C3' O3' HA 305.8 316.1
H3' C3' C2' C1' 280.8 279.9
H3' C3' C2' H2'1 155.6 41.3
H3' C3' C2' H2'2 46.1 160.9
HA O3' C3' C2' 74.0 79.2
HA O3' C3' H3' 305.8 316.1
O4' C1' C2' N1 185.6 120.6
O4' C1' C2' H1' 92.5 242.3
C1' C2' C3' H3' 280.8 279.9
C3' C2' C1' H2'1 234.7 121.6
C3' C2' C1' H2'2 125.3 242.1
H2'1 C2' C1' H2'2 250.5 120.5
N1 C1' C2' H1' 266.9 121.7
C2' C1' N1 C2 149.8 88.7
C2' C1' N1 C6 327.4 266.3
H2'1 C2' C3' H3' 155.6 41.3
C3' C2' H2'1 C1' 116.4 245.1
C3' C2' H2'1 H2'2 238.2 121.7
C1' C2' H2'1 H2'2 121.8 236.6
H2'1 C2' C1' N1 255.6 89.0
H2'1 C2' C1' H1' 348.8 327.3
H2'2 C2' C3' H3' 46.1 160.9
C3' C2' H2'2 C1' 243.6 112.6
C3' C2' H2'2 H2'1 121.8 236.6
C1' C2' H2'2 H2'1 238.2 124.0
H2'2 C2' C1' N1 5.1 328.5
H2'2 C2' C1' H1' 98.2 206.8
O4' C1' N1 C2' 173.3 240.8
O4' C1' N1 H1' 266.5 117.1
N1 C1' C2' H2'1 255.6 89.0
N1 C1' C2' H2'2 5.1 328.5
C2' C1' N1 H1' 93.1 236.3
C2 N1 C1' C6 182.5 182.5
C1' N1 C2 O2 352.3 354.0
C1' N1 C2 N3 172.3 171.6
C1' N1 C6 C5 167.2 166.5
C1' N1 C6 SG 299.9 349.7
O4' C1' H1' C2' 250.0 117.3
O4' C1' H1' N1 127.7 241.9
H1' C1' C2' H2'1 348.8 327.3
H1' C1' C2' H2'2 98.2 206.8
C2' C1' H1' N1 237.7 124.6
H1' C1' N1 C2 56.7 212.4
H1' C1' N1 C6 234.2 30.0
C2 N1 C1' H1' 56.7 212.4
C1' N1 C2 C6 177.5 177.4
C2 N1 C6 C5 344.8 343.9
C2 N1 C6 SG 117.5 167.0
O2 C2 N1 N3 179.9 182.4
N1 C2 N3 C4 17.5 10.4
N1 C2 N3 H3 197.5 190.3
C6 N1 C1' H1' 234.2 30.0
C1' N1 C6 C2 182.4 182.7
C6 N1 C2 O2 174.8 176.6
C6 N1 C2 N3 354.8 354.2
C4 C5 C6 N1 23.6 33.1
N1 C6 C5 CM5 253.2 273.6
N1 C6 C5 F 141.6 156.2
C5 C6 N1 SG 227.3 176.8
O2 C2 N1 C6 174.8 176.6
N1 C2 O2 N3 180.1 177.4
O2 C2 N3 C4 197.5 188.1
O2 C2 N3 H3 17.5 7.9
N3 C2 N1 C6 354.8 354.2
N1 C2 N3 O2 179.9 182.3
C4 N3 C2 H3 180.0 180.2
C2 N3 C4 N4 170.8 185.3
C2 N3 C4 C5 351.9 8.3
C2 N3 C4 H3 180.0 179.8
N4 C4 N3 C5 178.9 177.0
N3 C4 C5 C6 347.1 330.3
N3 C4 C5 CM5 118.0 90.6
N3 C4 C5 F 231.5 205.9
C2 N3 H3 C4 180.0 180.2
H3 N3 C4 N4 350.7 5.5
H3 N3 C4 C5 171.9 188.5
N4 C4 N3 H3 350.7 5.5
N3 C4 N4 C5 181.1 183.2
N4 C4 C5 C6 168.2 153.4
N4 C4 C5 CM5 299.1 273.6
N4 C4 C5 F 52.6 28.9
N1 C6 C5 C4 23.6 33.1
C5 C4 N3 H3 171.9 188.5
N3 C4 C5 N4 178.9 177.0
C6 C5 C4 CM5 229.1 239.8
C6 C5 C4 F 115.6 124.5
C4 C5 C6 SG 248.9 210.1
CM5 C5 C4 F 246.5 244.7
C4 C5 CM5 HM51 48.3 113.1
C4 C5 CM5 HM52 283.0 233.2
C4 C5 CM5 HM53 173.5 353.2
N1 C6 C5 SG 134.7 182.9
C4 C5 C6 CM5 130.4 119.4
C4 C5 C6 F 242.0 236.8
CM5 C5 C6 F 111.6 117.4
C6 C5 CM5 HM51 180.0 236.3
C6 C5 CM5 HM52 54.8 356.3
C6 C5 CM5 HM53 305.2 116.4
C4 C5 CM5 C6 228.3 236.9
C4 C5 CM5 F 116.4 116.7
C6 C5 CM5 F 248.1 239.8
CM5 C5 C6 SG 118.5 90.7
HM51 CM5 C5 HM52 125.2 239.9
HM51 CM5 C5 HM53 234.7 119.9
HM52 CM5 C5 HM53 109.5 240.0
C4 C5 F C6 122.4 125.7
C4 C5 F CM5 240.9 244.3
C6 C5 F CM5 118.5 118.6
F C5 C6 SG 6.9 333.3
F C5 CM5 HM51 291.9 356.4
F C5 CM5 HM52 166.7 116.5
F C5 CM5 HM53 57.2 236.5
N1 C6 SG C5 223.0 176.7
SG C6 C5 CM5 118.5 90.7
SG C6 C5 F 6.9 333.3
HM51 CM5 C5 F 291.9 356.4
C5 CM5 HM51 HM52 234.8 121.4
C5 CM5 HM51 HM53 125.3 238.8
HM52 CM5 HM51 HM53 250.5 117.4
HM52 CM5 C5 F 166.7 116.5
C5 CM5 HM52 HM51 126.5 238.7
C5 CM5 HM52 HM53 243.3 121.3
HM51 CM5 HM52 HM53 116.7 242.6
HM53 CM5 C5 F 57.2 236.5
C5 CM5 HM53 HM51 233.4 121.2
C5 CM5 HM53 HM52 116.7 238.7
HM51 CM5 HM53 HM52 243.3 117.4