PDB Chemical Component AF1

Ideal Model

Chemical Description

Name 4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-beta-D-glucopyranose
Synonyms 4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-beta-D-glucose; 4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-D-glucose; 4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-glucose
Formula C13 H23 N O8
Formal charge 0
Molecular weight 321.324 g/mol
Component type D-saccharide, beta linking

Chemical features

Atom count 45
Chiral atom count 9
Chiral atoms C1 C2 C3 C4 C5 C1H C2H C3H C4H
Observed leaving atoms O1 HO2 HO3 HO1
Bond count 46
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-beta-D-glucopyranose
Systematic name (OpenEye OEToolkits) (2R,3R,4S,5S)-6-methyl-5-[[(1S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)-1-cyclohex-2-enyl]amino]oxane-2,3,4-triol

Chemical Descriptors

Stereo SMILES (CACTVS) C[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1N[C@H]2C=C(CO)[C@H](O)[C@H](O)[C@H]2O
SMILES (CACTVS) C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1N[CH]2C=C(CO)[CH](O)[CH](O)[CH]2O
Stereo SMILES (OpenEye) CC1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)N[C@H]2C=C(C([C@@H]([C@H]2O)O)O)CO
InChI descriptor InChI=1S/C13H23NO8/c1-4-7(10(18)12(20)13(21)22-4)14-6-2-5(3-15)8(16)11(19)9(6)17/h2,4,6-21H,3H2,1H3/t4-,6+,7-,8?,9+,10+,11+,12-,13-/m1/s1
InChIKey descriptor RBZIIHWPZWOIDU-MKXIPYFISA-N

Status Information

Last modified 2020-07-17
Created 1999-07-08
Release status REL
Model PDB code 1BG9
Processing site RCSB