PDB Chemical Component AF1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AF1

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.548 1.531
C1 O1 1.437 1.429
C1 O5 1.450 1.429
C1 H1 1.100 1.090
C2 C3 1.499 1.532
C2 O2 1.419 1.428
C2 H2 1.100 1.090
C3 C4 1.544 1.532
C3 O3 1.431 1.429
C3 H3 1.100 1.090
C4 C5 1.583 1.531
C4 N4 1.449 1.469
C4 H4 1.100 1.089
C5 C6 1.522 1.530
C5 O5 1.448 1.429
C5 H5 1.100 1.089
C6 H61 1.100 1.090
C6 H62 1.100 1.090
C6 H6B 1.100 1.090
O2 HO2 0.950 0.967
O3 HO3 0.950 0.967
N4 C1H 1.423 1.469
N4 HN4 1.000 1.009
C1H C2H 1.522 1.530
C1H C6H 1.431 1.501
C1H H1H 1.100 1.090
C2H C3H 1.500 1.534
C2H O2H 1.419 1.429
C2H H2H 1.099 1.090
C3H C4H 1.557 1.530
C3H O3H 1.427 1.429
C3H H3H 1.100 1.090
C4H C5H 1.565 1.500
C4H O4H 1.450 1.429
C4H H4H 1.100 1.090
C5H C6H 1.389 1.295
C5H C7H 1.549 1.506
C6H H6H 1.080 1.080
C7H O7H 1.441 1.429
C7H H7H 1.100 1.091
C7H H7HA 1.100 1.090
O2H HO2H 0.950 0.967
O3H HO3H 0.950 0.967
O4H HO4H 0.951 0.968
O7H HO7H 0.950 0.967
O1 HO1 0.950 0.967

Bond Angles for AF1

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 O1 110.1 109.4
C2 C1 O5 108.3 109.5
C2 C1 H1 112.8 109.5
C1 C2 C3 108.2 109.1
C1 C2 O2 107.7 109.5
C1 C2 H2 111.8 109.5
O1 C1 O5 116.9 109.4
O1 C1 H1 103.4 109.4
C1 O1 HO1 109.5 114.0
O5 C1 H1 105.3 109.5
C1 O5 C5 114.0 114.0
C3 C2 O2 110.7 109.5
C3 C2 H2 109.0 109.5
C2 C3 C4 110.2 109.0
C2 C3 O3 117.5 109.5
C2 C3 H3 102.8 109.5
O2 C2 H2 109.4 109.6
C2 O2 HO2 109.5 114.0
C4 C3 O3 108.3 109.6
C4 C3 H3 113.1 109.6
C3 C4 C5 110.5 109.1
C3 C4 N4 96.3 109.5
C3 C4 H4 118.3 109.5
O3 C3 H3 105.0 109.6
C3 O3 HO3 109.5 114.0
C5 C4 N4 113.2 109.5
C5 C4 H4 103.0 109.6
C4 C5 C6 126.9 109.5
C4 C5 O5 117.1 109.4
C4 C5 H5 69.0 109.5
N4 C4 H4 115.9 109.6
C4 N4 C1H 125.0 111.0
C4 N4 HN4 104.6 111.0
C6 C5 O5 115.5 109.4
C6 C5 H5 78.3 109.5
C5 C6 H61 109.5 109.5
C5 C6 H62 109.5 109.5
C5 C6 H6B 109.5 109.4
O5 C5 H5 135.9 109.5
H61 C6 H62 109.5 109.5
H61 C6 H6B 109.5 109.4
H62 C6 H6B 109.5 109.5
C1H N4 HN4 104.6 111.0
N4 C1H C2H 111.5 109.3
N4 C1H C6H 119.3 109.4
N4 C1H H1H 102.7 109.3
C2H C1H C6H 115.4 110.2
C2H C1H H1H 108.2 109.4
C1H C2H C3H 109.4 108.4
C1H C2H O2H 109.6 109.7
C1H C2H H2H 109.0 109.7
C6H C1H H1H 97.1 109.3
C1H C6H C5H 120.2 124.1
C1H C6H H6H 119.9 117.9
C3H C2H O2H 108.3 109.6
C3H C2H H2H 110.3 109.6
C2H C3H C4H 108.0 108.4
C2H C3H O3H 108.2 109.7
C2H C3H H3H 112.6 109.7
O2H C2H H2H 110.1 109.8
C2H O2H HO2H 109.5 114.0
C4H C3H O3H 113.2 109.6
C4H C3H H3H 107.5 109.6
C3H C4H C5H 116.2 110.2
C3H C4H O4H 119.0 109.3
C3H C4H H4H 162.6 109.4
O3H C3H H3H 107.4 109.8
C3H O3H HO3H 109.5 113.9
C5H C4H O4H 124.8 109.3
C5H C4H H4H 81.2 109.4
C4H C5H C6H 119.2 124.1
C4H C5H C7H 122.7 118.0
O4H C4H H4H 43.6 109.2
C4H O4H HO4H 109.5 114.0
C6H C5H C7H 118.1 117.9
C5H C6H H6H 119.9 118.0
C5H C7H O7H 115.2 109.5
C5H C7H H7H 107.6 109.4
C5H C7H H7HA 106.3 109.5
O7H C7H H7H 107.6 109.4
O7H C7H H7HA 106.3 109.5
C7H O7H HO7H 109.5 114.0
H7H C7H H7HA 114.1 109.4

Torsion Angles for AF1

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1 C1 C2 O5 128.9 119.9
O1 C1 C2 H1 245.0 240.0
C2 C1 O1 HO1 247.2 180.0
O5 C1 C2 H1 116.2 120.1
C2 C1 O5 C5 302.6 298.8
C3 C2 C1 O2 240.3 240.1
C3 C2 C1 H2 120.0 119.8
C1 C2 C3 C4 296.6 303.0
C1 C2 C3 O3 172.1 183.2
C1 C2 C3 H3 57.4 62.9
O2 C2 C1 H2 239.7 239.7
C1 C2 O2 HO2 61.7 60.1
C2 C1 O1 O5 236.0 240.0
C2 C1 O1 H1 120.8 120.1
O1 C1 C2 C3 196.7 177.6
O1 C1 C2 O2 316.4 297.5
O1 C1 C2 H2 76.7 57.7
O5 C1 O1 H1 244.8 240.0
O1 C1 O5 C5 177.6 178.9
C2 C1 O5 O1 124.9 119.9
C2 C1 O5 H1 239.0 239.9
O5 C1 C2 C3 67.9 57.6
O5 C1 C2 O2 187.6 177.5
O5 C1 C2 H2 307.9 297.8
O1 C1 O5 H1 114.1 120.0
O5 C1 O1 HO1 11.2 300.0
C4 C5 O5 C1 44.2 61.2
C6 C5 O5 C1 217.2 181.1
C1 O5 C5 H5 317.1 301.2
C2 C1 H1 O1 241.1 240.0
C2 C1 H1 O5 118.0 120.0
H1 C1 C2 C3 311.7 297.6
H1 C1 C2 O2 71.4 57.5
H1 C1 C2 H2 191.7 177.7
O1 C1 H1 O5 236.8 240.0
H1 C1 O1 HO1 126.4 60.0
H1 C1 O5 C5 63.5 58.9
C3 C2 C1 O1 196.7 177.6
C3 C2 C1 O5 67.9 57.6
C3 C2 C1 H1 311.7 297.6
C1 C2 C3 O2 117.8 119.9
C1 C2 C3 H2 238.2 240.1
O2 C2 C3 H2 120.4 120.3
C3 C2 O2 HO2 179.8 179.7
C4 C3 C2 O3 124.6 119.9
C4 C3 C2 H3 239.2 240.1
C2 C3 C4 C5 47.4 57.0
C2 C3 C4 N4 165.1 176.9
C2 C3 C4 H4 289.1 297.1
O3 C3 C2 H3 114.6 120.2
C2 C3 O3 HO3 307.7 300.0
O2 C2 C1 O1 316.4 297.5
O2 C2 C1 O5 187.6 177.5
O2 C2 C1 H1 71.4 57.5
C1 C2 O2 C3 241.9 240.4
C1 C2 O2 H2 121.8 120.2
C3 C2 O2 H2 239.9 239.8
O2 C2 C3 C4 178.8 183.1
O2 C2 C3 O3 54.2 63.3
O2 C2 C3 H3 299.6 303.0
H2 C2 C1 O1 76.7 57.7
H2 C2 C1 O5 307.9 297.8
H2 C2 C1 H1 191.7 177.7
C1 C2 H2 C3 119.6 119.6
C1 C2 H2 O2 240.7 239.8
C3 C2 H2 O2 121.1 120.2
H2 C2 C3 C4 58.4 62.9
H2 C2 C3 O3 293.9 303.0
H2 C2 C3 H3 179.2 182.8
H2 C2 O2 HO2 299.9 299.8
C4 C3 C2 O2 178.8 183.1
C4 C3 C2 H2 58.4 62.9
C2 C3 C4 O3 230.3 240.2
C2 C3 C4 H3 114.4 119.9
O3 C3 C4 H3 244.1 239.7
C4 C3 O3 HO3 182.2 180.4
C5 C4 C3 N4 242.3 240.1
C5 C4 C3 H4 118.3 119.9
C3 C4 C5 C6 150.1 182.4
C3 C4 C5 O5 322.2 302.3
C3 C4 C5 H5 94.1 62.3
N4 C4 C3 H4 236.0 239.8
C3 C4 N4 C1H 136.5 100.3
C3 C4 N4 HN4 256.6 224.2
O3 C3 C2 O2 54.2 63.3
O3 C3 C2 H2 293.9 303.0
C2 C3 O3 C4 125.5 119.6
C2 C3 O3 H3 246.6 239.8
C4 C3 O3 H3 121.0 120.3
O3 C3 C4 C5 177.1 176.9
O3 C3 C4 N4 294.8 296.7
O3 C3 C4 H4 58.8 56.9
H3 C3 C2 O2 299.6 303.0
H3 C3 C2 H2 179.2 182.8
C2 C3 H3 C4 241.2 240.4
C2 C3 H3 O3 123.4 120.2
C4 C3 H3 O3 242.2 239.7
H3 C3 C4 C5 293.0 297.1
H3 C3 C4 N4 50.7 57.0
H3 C3 C4 H4 174.6 177.2
H3 C3 O3 HO3 61.2 60.2
C1 O5 C5 C4 44.2 61.2
C5 C4 C3 O3 177.1 176.9
C5 C4 C3 H3 293.0 297.1
C3 C4 C5 N4 106.7 119.8
C3 C4 C5 H4 232.7 240.1
N4 C4 C5 H4 125.9 120.3
C5 C4 N4 C1H 252.1 219.9
C5 C4 N4 HN4 12.1 343.8
C6 C5 C4 O5 187.9 240.1
C6 C5 C4 H5 56.0 120.1
C4 C5 C6 H61 50.3 61.7
C4 C5 C6 H62 170.4 181.8
C4 C5 C6 H6B 290.4 301.8
O5 C5 C4 H5 228.1 240.0
N4 C4 C3 O3 294.8 296.7
N4 C4 C3 H3 50.7 57.0
C3 C4 N4 C5 244.4 240.4
C3 C4 N4 H4 125.7 120.1
C5 C4 N4 H4 241.3 239.8
N4 C4 C5 C6 43.4 62.6
N4 C4 C5 O5 215.5 182.5
N4 C4 C5 H5 347.4 302.5
C1H N4 C4 HN4 240.0 236.1
C4 N4 C1H C2H 212.8 206.3
C4 N4 C1H C6H 74.1 85.6
C4 N4 C1H H1H 328.4 326.0
H4 C4 C3 O3 58.8 56.9
H4 C4 C3 H3 174.6 177.2
C3 C4 H4 C5 122.2 119.7
C3 C4 H4 N4 246.4 239.9
C5 C4 H4 N4 124.2 120.2
H4 C4 C5 C6 277.4 302.3
H4 C4 C5 O5 89.5 62.2
H4 C4 C5 H5 221.5 182.2
H4 C4 N4 C1H 10.8 340.1
H4 C4 N4 HN4 130.8 104.0
C1 O5 C5 C6 217.2 181.1
C6 C5 C4 N4 43.4 62.6
C6 C5 C4 H4 277.4 302.3
C4 C5 C6 O5 172.2 119.9
C4 C5 C6 H5 307.8 239.9
O5 C5 C6 H5 135.6 120.0
H61 C6 C5 H62 240.0 239.9
H61 C6 C5 H6B 120.0 119.9
H62 C6 C5 H6B 240.0 240.0
C5 O5 C1 H1 63.5 58.9
O5 C5 C4 N4 215.5 182.5
O5 C5 C4 H4 89.5 62.2
C4 C5 O5 C6 187.0 240.1
C4 C5 O5 H5 87.1 120.0
C6 C5 O5 H5 260.1 240.0
O5 C5 C6 H61 238.1 301.8
O5 C5 C6 H62 358.1 61.9
O5 C5 C6 H6B 118.1 181.9
H5 C5 C4 N4 347.4 302.5
H5 C5 C4 H4 221.5 182.2
C4 C5 H5 C6 137.4 120.1
C4 C5 H5 O5 252.2 240.0
C6 C5 H5 O5 114.8 120.0
H5 C5 C6 H61 102.5 181.8
H5 C5 C6 H62 222.5 301.9
H5 C5 C6 H6B 342.5 61.9
H61 C6 C5 O5 238.1 301.8
H61 C6 C5 H5 102.5 181.8
C5 C6 H61 H62 120.0 120.1
C5 C6 H61 H6B 240.0 240.1
H62 C6 H61 H6B 120.0 120.0
H62 C6 C5 O5 358.1 61.9
H62 C6 C5 H5 222.5 301.9
C5 C6 H62 H61 240.0 239.9
C5 C6 H62 H6B 120.0 120.0
H61 C6 H62 H6B 240.0 240.0
H6B C6 C5 O5 118.1 181.9
H6B C6 C5 H5 342.5 61.9
C5 C6 H6B H61 120.0 120.0
C5 C6 H6B H62 240.0 240.0
H61 C6 H6B H62 120.0 120.0
HO2 O2 C2 H2 299.9 299.8
HO3 O3 C3 H3 61.2 60.2
C1H N4 C4 H4 10.8 340.1
C4 N4 C1H HN4 120.0 123.9
C2H C1H N4 C6H 138.6 120.7
C2H C1H N4 H1H 244.4 240.3
N4 C1H C2H C3H 278.3 190.3
N4 C1H C2H O2H 37.0 310.0
N4 C1H C2H H2H 157.6 70.7
C6H C1H N4 H1H 105.8 119.6
N4 C1H C6H C5H 105.7 137.3
N4 C1H C6H H6H 285.7 317.3
HN4 N4 C4 H4 130.8 104.0
C4 N4 HN4 C1H 227.2 236.1
HN4 N4 C1H C2H 92.7 82.5
HN4 N4 C1H C6H 314.1 321.8
HN4 N4 C1H H1H 208.3 202.2
C2H C1H N4 HN4 92.7 82.5
N4 C1H C2H C6H 219.7 239.8
N4 C1H C2H H1H 112.2 119.7
C6H C1H C2H H1H 252.5 239.9
C2H C1H C6H C5H 328.6 17.1
C2H C1H C6H H6H 148.6 197.1
C3H C2H C1H O2H 241.3 240.3
C3H C2H C1H H2H 120.7 119.7
C1H C2H C3H C4H 300.2 67.4
C1H C2H C3H O3H 177.3 307.7
C1H C2H C3H H3H 58.8 187.1
O2H C2H C1H H2H 239.4 239.4
C1H C2H O2H HO2H 271.6 180.0
C6H C1H N4 HN4 314.1 321.8
N4 C1H C6H C2H 137.1 120.2
N4 C1H C6H H1H 251.1 240.4
C2H C1H C6H H1H 114.0 120.2
C6H C1H C2H C3H 58.6 310.6
C6H C1H C2H O2H 177.3 70.2
C6H C1H C2H H2H 297.9 190.9
C4H C5H C6H C1H 9.0 359.6
C1H C6H C5H C7H 188.3 179.5
C5H C6H C1H H6H 180.0 180.0
H1H C1H N4 HN4 208.3 202.2
N4 C1H H1H C2H 242.0 240.3
N4 C1H H1H C6H 122.3 119.7
C2H C1H H1H C6H 240.3 239.4
H1H C1H C2H C3H 166.1 70.7
H1H C1H C2H O2H 284.8 190.3
H1H C1H C2H H2H 45.4 311.0
H1H C1H C6H C5H 214.6 257.0
H1H C1H C6H H6H 34.6 76.9
C3H C2H C1H C6H 58.6 310.6
C3H C2H C1H H1H 166.1 70.7
C1H C2H C3H O2H 119.5 119.7
C1H C2H C3H H2H 240.1 240.3
O2H C2H C3H H2H 120.6 120.6
C3H C2H O2H HO2H 31.0 299.0
C4H C3H C2H O3H 122.9 119.7
C4H C3H C2H H3H 241.4 240.4
C2H C3H C4H C5H 39.2 310.6
C2H C3H C4H O4H 219.2 70.8
C2H C3H C4H H4H 217.5 190.3
O3H C3H C2H H3H 118.5 120.7
C2H C3H O3H HO3H 278.8 180.0
O2H C2H C1H C6H 177.3 70.2
O2H C2H C1H H1H 284.8 190.3
C1H C2H O2H C3H 240.6 241.0
C1H C2H O2H H2H 119.9 120.6
C3H C2H O2H H2H 239.3 239.5
O2H C2H C3H C4H 180.7 307.7
O2H C2H C3H O3H 57.8 188.0
O2H C2H C3H H3H 299.3 67.4
H2H C2H C1H C6H 297.9 190.9
H2H C2H C1H H1H 45.4 311.0
C1H C2H H2H C3H 120.2 119.0
C1H C2H H2H O2H 239.7 239.4
C3H C2H H2H O2H 119.5 120.5
H2H C2H C3H C4H 60.1 187.1
H2H C2H C3H O3H 297.2 67.5
H2H C2H C3H H3H 178.7 306.8
H2H C2H O2H HO2H 151.7 59.4
C4H C3H C2H O2H 180.7 307.7
C4H C3H C2H H2H 60.1 187.1
C2H C3H C4H O3H 240.2 240.3
C2H C3H C4H H3H 121.8 119.7
O3H C3H C4H H3H 241.5 239.4
C4H C3H O3H HO3H 159.1 61.0
C5H C4H C3H O4H 180.0 239.8
C5H C4H C3H H4H 181.6 120.3
C3H C4H C5H C6H 346.4 17.1
C3H C4H C5H C7H 167.1 197.1
O4H C4H C3H H4H 1.7 240.5
C3H C4H O4H HO4H 351.2 180.0
O3H C3H C2H O2H 57.8 188.0
O3H C3H C2H H2H 297.2 67.5
C2H C3H O3H C4H 119.7 119.0
C2H C3H O3H H3H 238.2 239.4
C4H C3H O3H H3H 118.5 120.5
O3H C3H C4H C5H 158.9 70.3
O3H C3H C4H O4H 339.0 190.5
O3H C3H C4H H4H 337.3 310.0
H3H C3H C2H O2H 299.3 67.4
H3H C3H C2H H2H 178.7 306.8
C2H C3H H3H C4H 241.1 241.1
C2H C3H H3H O3H 119.0 120.6
C4H C3H H3H O3H 237.9 239.5
H3H C3H C4H C5H 277.4 190.9
H3H C3H C4H O4H 97.4 311.1
H3H C3H C4H H4H 95.8 70.6
H3H C3H O3H HO3H 40.6 300.6
C1H C6H C5H C4H 9.0 359.6
C5H C4H C3H O3H 158.9 70.3
C5H C4H C3H H3H 277.4 190.9
C3H C4H C5H O4H 180.0 120.2
C3H C4H C5H H4H 179.5 239.7
O4H C4H C5H H4H 359.5 119.5
C5H C4H O4H HO4H 171.2 300.7
C6H C5H C4H C7H 179.3 179.9
C4H C5H C6H H6H 189.0 179.6
C4H C5H C7H O7H 224.8 180.0
C4H C5H C7H H7H 344.8 299.9
C4H C5H C7H H7HA 107.4 59.9
O4H C4H C3H O3H 339.0 190.5
O4H C4H C3H H3H 97.4 311.1
C3H C4H O4H C5H 180.0 239.3
C3H C4H O4H H4H 180.7 119.6
C5H C4H O4H H4H 0.8 240.3
O4H C4H C5H C6H 166.4 256.9
O4H C4H C5H C7H 347.0 77.0
H4H C4H C3H O3H 337.3 310.0
H4H C4H C3H H3H 95.8 70.6
C3H C4H H4H C5H 181.5 120.8
C3H C4H H4H O4H 2.1 240.4
C5H C4H H4H O4H 180.6 119.6
H4H C4H C5H C6H 166.9 137.3
H4H C4H C5H C7H 347.6 317.4
H4H C4H O4H HO4H 170.4 60.4
C5H C6H C1H H1H 214.6 257.0
C1H C6H C5H H6H 180.0 180.0
C6H C5H C4H O4H 166.4 256.9
C6H C5H C4H H4H 166.9 137.3
C4H C5H C6H C7H 180.6 180.1
C6H C5H C7H O7H 45.5 0.0
C6H C5H C7H H7H 165.5 120.0
C6H C5H C7H H7HA 288.1 240.0
C7H C5H C4H O4H 347.0 77.0
C7H C5H C4H H4H 347.6 317.4
C4H C5H C7H C6H 179.3 179.9
C7H C5H C6H H6H 8.3 359.5
O7H C7H C5H H7H 240.0 240.1
O7H C7H C5H H7HA 117.4 120.1
C5H C7H O7H HO7H 202.6 180.0
H7H C7H C5H H7HA 237.4 240.0
H6H C6H C1H H1H 34.6 76.9
C1H C6H H6H C5H 180.0 180.0
H6H C6H C5H C7H 8.3 359.5
C5H C7H O7H H7H 120.0 120.0
C5H C7H O7H H7HA 242.6 239.9
H7H C7H O7H H7HA 122.6 119.9
C5H C7H H7H O7H 235.3 240.0
C5H C7H H7H H7HA 117.7 120.0
O7H C7H H7H H7HA 242.4 240.0
H7H C7H O7H HO7H 82.6 60.0
C5H C7H H7HA O7H 123.2 120.1
C5H C7H H7HA H7H 241.6 240.0
O7H C7H H7HA H7H 118.4 119.9
H7HA C7H O7H HO7H 320.1 300.1
HO2H O2H C2H H2H 151.7 59.4
HO3H O3H C3H H3H 40.6 300.6
HO4H O4H C4H H4H 170.4 60.4
HO7H O7H C7H H7H 82.6 60.0
HO7H O7H C7H H7HA 320.1 300.1
HO1 O1 C1 O5 11.2 300.0
HO1 O1 C1 H1 126.4 60.0