PDB Chemical Component 8RO

Ideal Model

Chemical Description

Name [(2~{R},3~{S},5~{R})-5-(5-methyl-2-oxidanylidene-7-thia-1,3-diazabicyclo[4.1.0]hept-5-en-3-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphite
Formula C10 H15 N2 O6 P S
Formal charge 0
Molecular weight 322.275 g/mol
Component type DNA linking
Nonstandard Parent Id DC

Chemical features

Atom count 35
Chiral atom count 3
Chiral atoms C4' C3' C1'
Bond count 37
Aromatic bond count 0

Chemical Identifiers

Systematic name (OpenEye OEToolkits) [(2~{R},3~{S},5~{R})-5-(5-methyl-2-oxidanylidene-7-thia-1,3-diazabicyclo[4.1.0]hept-5-en-3-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphite

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=C2SN2C(=O)N(C1)[C@H]3C[C@H](O)[C@@H](COP(O)O)O3
SMILES (CACTVS) CC1=C2SN2C(=O)N(C1)[CH]3C[CH](O)[CH](COP(O)O)O3
Stereo SMILES (OpenEye) CC1=C2N(S2)C(=O)N(C1)[C@H]3C[C@@H]([C@H](O3)COP(O)O)O
InChI descriptor InChI=1S/C10H15N2O6PS/c1-5-3-11(10(14)12-9(5)20-12)8-2-6(13)7(18-8)4-17-19(15)16/h6-8,13,15-16H,2-4H2,1H3/t6-,7+,8+,12?/m0/s1
InChIKey descriptor GSELOCGYYRGWPL-AARIFPKGSA-N

Status Information

Last modified 2017-09-15
Created 2017-09-01
Release status REL
Model PDB code 5XUV
Processing site RCSB