PDB Chemical Component 8RO

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 8RO

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.485 1.610
P OP2 1.478 1.609
P O5' 1.588 1.610
O5' C5' 1.414 1.429
C5' C4' 1.505 1.530
C4' O4' 1.441 1.443
C4' C3' 1.527 1.550
O4' C1' 1.408 1.437
C3' O3' 1.428 1.429
C3' C2' 1.555 1.548
C2' C1' 1.537 1.540
C1' N1 1.540 1.465
N1 C2 1.374 1.349
N1 C6 1.384 1.456
C2 O2 1.210 1.217
C2 N3 1.404 1.342
N3 C4 1.412 1.451
N3 S4 2.400 1.627
C4 S4 1.302 1.742
C4 C5 1.475 1.327
C5 C7 1.500 1.507
C5 C6 1.365 1.520
OP1 H1 0.950 0.967
OP2 H2 0.950 0.967
C5' H3 1.100 1.090
C5' H4 1.100 1.089
C4' H5 1.100 1.091
C3' H6 1.100 1.090
O3' H7 0.950 0.966
C2' H8 1.100 1.091
C2' H9 1.100 1.090
C1' H10 1.100 1.090
C7 H11 1.100 1.089
C7 H12 1.100 1.090
C7 H13 1.100 1.090
C6 H14 1.100 1.090
C6 H15 1.100 1.089

Bond Angles for 8RO

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 122.3 102.0
OP1 P O5' 106.7 102.0
P OP1 H1 109.5 114.0
OP2 P O5' 107.1 102.0
P OP2 H2 109.5 114.0
P O5' C5' 119.5 123.0
O5' C5' C4' 107.6 109.4
O5' C5' H3 109.9 109.5
O5' C5' H4 109.9 109.5
C5' C4' O4' 109.2 110.7
C5' C4' C3' 112.8 110.6
C4' C5' H3 109.9 109.4
C4' C5' H4 109.9 109.5
C5' C4' H5 109.4 110.5
O4' C4' C3' 106.0 103.5
C4' O4' C1' 111.5 107.0
O4' C4' H5 110.3 110.6
C4' C3' O3' 107.0 110.9
C4' C3' C2' 105.4 102.1
C3' C4' H5 109.1 110.7
C4' C3' H6 109.2 110.9
O4' C1' C2' 105.1 107.3
O4' C1' N1 106.4 109.9
O4' C1' H10 110.2 109.9
O3' C3' C2' 115.7 110.9
O3' C3' H6 110.5 110.8
C3' O3' H7 109.5 114.0
C3' C2' C1' 103.9 104.2
C2' C3' H6 108.8 111.0
C3' C2' H8 110.8 110.5
C3' C2' H9 110.9 110.5
C2' C1' N1 118.3 109.9
C1' C2' H8 110.9 110.5
C1' C2' H9 110.9 110.5
C2' C1' H10 108.4 109.9
C1' N1 C2 119.0 116.6
C1' N1 C6 121.4 116.6
N1 C1' H10 108.4 110.0
C2 N1 C6 119.6 126.7
N1 C2 O2 119.9 121.1
N1 C2 N3 116.5 117.8
N1 C6 C5 124.3 111.0
N1 C6 H14 105.6 109.2
N1 C6 H15 105.6 109.2
O2 C2 N3 123.6 121.1
C2 N3 C4 127.9 107.5
C2 N3 S4 154.5 131.4
C4 N3 S4 26.7 68.7
N3 C4 S4 124.2 60.5
N3 C4 C5 111.7 130.8
N3 S4 C4 29.1 50.9
S4 C4 C5 124.0 164.6
C4 C5 C7 121.2 123.9
C4 C5 C6 120.0 112.2
C7 C5 C6 118.8 123.9
C5 C7 H11 109.5 109.5
C5 C7 H12 109.4 109.5
C5 C7 H13 109.5 109.4
C5 C6 H14 105.6 109.3
C5 C6 H15 105.6 109.0
H3 C5' H4 109.5 109.5
H8 C2' H9 109.4 110.5
H11 C7 H12 109.5 109.5
H11 C7 H13 109.4 109.5
H12 C7 H13 109.5 109.5
H14 C6 H15 109.5 109.1

Torsion Angles for 8RO

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 O5' 236.5 254.8
OP1 P OP2 H2 180.0 285.2
OP1 P O5' C5' 56.1 89.8
OP1 P OP2 O5' 123.3 105.2
OP2 P OP1 H1 180.0 180.0
OP2 P O5' C5' 188.6 195.0
OP1 P O5' OP2 227.5 254.8
O5' P OP1 H1 303.5 285.2
O5' P OP2 H2 56.7 180.0
P O5' C5' C4' 173.9 180.0
P O5' C5' H3 293.6 299.9
P O5' C5' H4 54.2 60.0
O5' C5' C4' O4' 295.3 66.4
O5' C5' C4' C3' 52.9 180.5
C4' C5' O5' H3 240.3 240.1
C4' C5' O5' H4 119.7 120.0
O5' C5' C4' H5 174.6 303.5
H3 C5' O5' H4 239.4 240.0
O5' C5' C4' H3 119.7 119.9
O5' C5' C4' H4 240.3 240.0
O4' C4' C5' C3' 242.4 245.9
C5' C4' O4' C1' 142.8 158.6
O4' C4' C5' H5 120.8 122.9
C5' C4' C3' O3' 113.6 86.2
C5' C4' C3' C2' 237.2 204.4
C3' C4' C5' H5 238.4 237.0
C5' C4' C3' H6 354.0 322.7
H3 C5' C4' H4 120.6 120.0
C5' C4' O4' C3' 121.8 118.5
O4' C4' C5' H3 175.6 306.5
O4' C4' C5' H4 55.0 186.5
C5' C4' O4' H5 239.8 237.2
O4' C4' C3' O3' 233.1 204.8
O4' C4' C3' C2' 356.7 323.0
C3' C4' O4' H5 118.0 118.7
O4' C4' C3' H6 113.4 81.3
C4' O4' C1' C2' 330.2 333.5
C4' O4' C1' N1 204.0 214.1
C4' O4' C1' H10 86.8 93.0
C5' C4' C3' O4' 240.5 241.4
C3' C4' C5' H3 293.2 60.6
C3' C4' C5' H4 172.6 300.6
C5' C4' C3' H5 121.8 122.9
C3' C4' O4' C1' 21.0 40.1
O4' C4' C3' H5 241.3 241.4
O3' C3' C4' C2' 236.4 241.8
O3' C3' C4' H6 119.6 123.6
C4' C3' O3' H7 180.0 180.0
C4' C3' C2' C1' 346.7 20.9
C2' C3' C4' H6 243.3 241.7
C4' C3' C2' H8 105.9 139.6
C4' C3' C2' H9 227.6 262.2
C1' O4' C4' C3' 21.0 40.1
C1' O4' C4' H5 263.1 281.4
C3' C2' C1' O4' 25.6 2.0
C2' C1' O4' N1 126.2 119.4
O4' C1' C2' H8 266.5 243.4
O4' C1' C2' H9 144.7 120.7
C2' C1' O4' H10 243.5 240.5
O4' C1' N1 C2 239.9 53.5
O4' C1' N1 C6 59.7 233.3
N1 C1' O4' H10 117.2 121.1
C4' C3' O3' C2' 117.1 112.7
O3' C3' C4' H5 351.8 323.4
C4' C3' O3' H6 241.3 236.4
O3' C3' C2' C1' 104.7 139.0
C2' C3' O3' H6 124.2 123.7
O3' C3' C2' H8 223.8 257.7
O3' C3' C2' H9 345.6 20.4
C4' C3' C2' O3' 242.0 241.8
C2' C3' C4' H5 115.4 81.6
C4' C3' C2' H6 117.0 118.2
O4' C1' C2' C3' 25.6 2.0
O3' C3' C2' H6 234.9 236.4
C2' C3' O3' H7 62.9 67.4
C3' C2' C1' N1 144.1 121.4
C1' C2' C3' H8 240.9 241.3
C1' C2' C3' H9 119.1 118.7
C3' C2' C1' H10 267.8 242.6
H8 C2' C3' H9 238.3 237.4
O4' C1' C2' N1 241.5 240.6
O4' C1' C2' H10 117.8 119.5
C1' C2' C3' H6 229.8 262.7
C3' C2' C1' H8 119.1 118.7
C3' C2' C1' H9 240.9 241.3
C2' C1' N1 C2 122.1 295.7
C2' C1' N1 C6 301.8 115.5
N1 C1' C2' H10 236.3 238.9
H8 C2' C1' H9 121.8 122.6
O4' C1' N1 C2' 117.8 117.8
O4' C1' N1 H10 241.6 238.9
N1 C1' C2' H8 25.0 2.7
N1 C1' C2' H9 263.2 240.1
C2' C1' N1 H10 123.7 121.1
C2 N1 C1' C6 180.3 180.2
C1' N1 C2 O2 358.6 20.1
C1' N1 C2 N3 179.5 200.0
C1' N1 C6 C5 180.4 189.6
C1' N1 C6 H14 302.4 310.1
C1' N1 C6 H15 58.4 69.4
C1' N1 C2 C6 179.7 179.8
C2 N1 C1' H10 358.3 174.6
C2 N1 C6 C5 0.1 9.3
C2 N1 C6 H14 122.1 129.9
C2 N1 C6 H15 238.1 249.2
O2 C2 N1 N3 179.0 180.1
N1 C2 N3 C4 0.4 320.8
N1 C2 N3 S4 0.0 244.1
C1' N1 C6 C2 180.3 180.2
C6 N1 C1' H10 178.1 354.4
C6 N1 C2 O2 178.8 200.3
C6 N1 C2 N3 359.8 20.2
C4 C5 C6 N1 359.8 347.1
C7 C5 C6 N1 179.8 166.8
C5 C6 N1 H14 238.0 239.4
C5 C6 N1 H15 122.0 120.2
H14 C6 N1 H15 244.0 240.7
O2 C2 N1 C6 178.8 200.3
N1 C2 O2 N3 181.0 179.9
O2 C2 N3 C4 181.4 140.7
O2 C2 N3 S4 181.0 64.1
N3 C2 N1 C6 359.8 20.2
N1 C2 N3 O2 179.0 180.1
C4 N3 C2 S4 0.4 76.7
C2 N3 C4 S4 180.4 231.6
C2 N3 C4 C5 359.5 38.7
C2 N3 S4 C4 0.8 94.9
C4 N3 S4 C4 360.0 -0.0
S4 C4 N3 C5 180.9 192.9
N3 C4 C5 C7 180.4 169.1
N3 C4 C5 C6 0.4 348.9
S4 N3 C4 S4 360.0 -0.0
S4 N3 C4 C5 179.1 167.1
N3 S4 C4 C5 181.0 219.5
S4 C4 N3 S4 360.0 -0.0
N3 C4 S4 C5 179.0 140.5
S4 C4 C5 C7 359.5 302.1
S4 C4 C5 C6 179.4 121.9
N1 C6 C5 C4 359.8 347.1
C5 C4 N3 S4 179.1 167.1
N3 C4 C5 S4 180.9 227.0
C7 C5 C4 C6 180.0 180.3
C4 C5 C7 H11 180.0 360.0
C4 C5 C7 H12 300.0 120.0
C4 C5 C7 H13 60.0 239.9
C4 C5 C6 H14 237.8 226.6
C4 C5 C6 H15 121.8 107.4
N1 C6 C5 C7 179.8 166.8
C4 C5 C7 C6 180.0 179.7
C7 C5 C6 H14 57.8 46.3
C7 C5 C6 H15 301.8 287.1
H11 C7 C5 H12 240.0 240.0
H11 C7 C5 H13 120.0 120.0
H12 C7 C5 H13 240.0 240.0
N1 C6 C5 H14 122.0 120.5
N1 C6 C5 H15 238.0 239.7
C4 C5 C6 C7 180.0 180.3
C6 C5 C7 H11 360.0 180.3
C6 C5 C7 H12 120.0 300.3
C6 C5 C7 H13 240.0 60.2
H14 C6 C5 H15 116.0 119.2
H1 OP1 P OP2 180.0 180.0
H1 OP1 P O5' 303.5 285.2
H2 OP2 P O5' 56.7 180.0
O5' C5' H3 C4' 241.7 240.1
O5' C5' H3 H4 120.8 120.0
H3 C5' C4' O4' 175.6 306.5
H3 C5' C4' C3' 293.2 60.6
C4' C5' H3 H4 239.1 240.0
H3 C5' C4' H5 54.8 183.6
O5' C5' H4 C4' 118.3 120.0
O5' C5' H4 H3 239.1 240.0
H4 C5' C4' O4' 55.0 186.5
H4 C5' C4' C3' 172.6 300.6
C4' C5' H4 H3 120.9 120.0
H4 C5' C4' H5 294.3 63.6
C5' C4' H5 O4' 120.1 122.9
C5' C4' H5 C3' 236.1 237.1
H5 C4' C5' H3 54.8 183.6
H5 C4' C5' H4 294.3 63.6
O4' C4' H5 C3' 116.0 114.2
H5 C4' O4' C1' 263.1 281.4
H5 C4' C3' O3' 351.8 323.4
H5 C4' C3' C2' 115.4 81.6
H5 C4' C3' H6 232.2 199.8
C4' C3' H6 O3' 117.4 123.6
C4' C3' H6 C2' 245.5 247.3
H6 C3' C4' H5 232.2 199.8
O3' C3' H6 C2' 128.0 123.7
H6 C3' O3' H7 298.8 303.6
H6 C3' C2' C1' 229.8 262.7
H6 C3' C2' H8 348.9 21.4
H6 C3' C2' H9 110.6 144.0
H7 O3' C3' C2' 62.9 67.4
H7 O3' C3' H6 298.8 303.6
C3' C2' H8 C1' 245.1 245.2
H8 C2' C3' H6 348.9 21.4
C3' C2' H8 H9 122.6 122.6
H8 C2' C1' N1 25.0 2.7
C1' C2' H8 H9 237.4 237.4
H8 C2' C1' H10 148.7 123.9
C3' C2' H9 C1' 114.9 114.8
H9 C2' C3' H6 110.6 144.0
C3' C2' H9 H8 237.5 237.4
H9 C2' C1' N1 263.2 240.1
C1' C2' H9 H8 122.6 122.6
H9 C2' C1' H10 26.9 1.3
O4' C1' H10 C2' 245.5 242.1
O4' C1' H10 N1 116.0 121.0
C2' C1' H10 N1 230.5 238.9
H10 C1' C2' H8 148.7 123.9
H10 C1' C2' H9 26.9 1.3
H10 C1' N1 C2 358.3 174.6
H10 C1' N1 C6 178.1 354.4
H11 C7 C5 C6 360.0 180.3
C5 C7 H11 H12 120.0 120.0
C5 C7 H11 H13 240.0 240.0
H12 C7 H11 H13 120.0 120.1
H12 C7 C5 C6 120.0 300.3
C5 C7 H12 H11 240.0 240.0
C5 C7 H12 H13 120.0 120.0
H11 C7 H12 H13 240.0 239.9
H13 C7 C5 C6 240.0 60.2
C5 C7 H13 H11 120.0 120.0
C5 C7 H13 H12 240.0 240.0
H11 C7 H13 H12 120.0 120.0
N1 C6 H14 C5 226.6 238.4
N1 C6 H14 H15 113.3 119.3
C5 C6 H14 H15 246.7 240.9
N1 C6 H15 C5 133.4 121.4
N1 C6 H15 H14 246.7 240.7
C5 C6 H15 H14 113.3 119.3