PDB Chemical Component 2TU

Ideal Model

Chemical Description

Name 1-(beta-D-ribofuranosyl)-2-thioxo-2,3-dihydropyrimidin-4(1H)-one
Synonyms 2-thiouridine
Formula C9 H12 N2 O5 S
Formal charge 0
Molecular weight 260.267 g/mol
Component type NON-POLYMER

Chemical features

Atom count 29
Chiral atom count 4
Chiral atoms C1' C2' C3' C4'
Bond count 30
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 1-(beta-D-ribofuranosyl)-2-thioxo-2,3-dihydropyrimidin-4(1H)-one
Systematic name (OpenEye OEToolkits) 1-[(2R,3R,4S,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-2-sulfanylidene-pyrimidin-4-one

Chemical Descriptors

Stereo SMILES (CACTVS) OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C=CC(=O)NC2=S
SMILES (CACTVS) OC[CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=O)NC2=S
Stereo SMILES (OpenEye) C1=CN(C(=S)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O
InChI descriptor InChI=1S/C9H12N2O5S/c12-3-4-6(14)7(15)8(16-4)11-2-1-5(13)10-9(11)17/h1-2,4,6-8,12,14-15H,3H2,(H,10,13,17)/t4-,6-,7-,8-/m1/s1
InChIKey descriptor GJTBSTBJLVYKAU-XVFCMESISA-N

Status Information

Last modified 2021-03-01
Created 2011-06-24
Release status REL
Model PDB code 3SFG
Processing site PDBJ