PDB Chemical Component 2TU
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2TU
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.403 |
1.346 |
| N1 |
C6 |
1.331 |
1.368 |
| N1 |
C1' |
1.468 |
1.465 |
| C2 |
S2 |
1.741 |
1.712 |
| C2 |
N3 |
1.347 |
1.345 |
| N3 |
C4 |
1.356 |
1.348 |
| C4 |
O4 |
1.251 |
1.217 |
| C4 |
C5 |
1.399 |
1.416 |
| C5 |
C6 |
1.391 |
1.351 |
| C1' |
C2' |
1.523 |
1.550 |
| C1' |
O4' |
1.423 |
1.444 |
| C2' |
O2' |
1.408 |
1.429 |
| C2' |
C3' |
1.530 |
1.548 |
| C3' |
O3' |
1.425 |
1.429 |
| C3' |
C4' |
1.525 |
1.541 |
| C4' |
O4' |
1.453 |
1.438 |
| C4' |
C5' |
1.516 |
1.530 |
| C5' |
O5' |
1.427 |
1.429 |
| N3 |
HN3 |
1.000 |
0.970 |
| C5 |
H5 |
1.080 |
1.080 |
| C6 |
H6 |
1.080 |
1.080 |
| C1' |
H1' |
1.100 |
1.089 |
| C2' |
H2' |
1.099 |
1.090 |
| O2' |
HO2' |
0.949 |
0.967 |
| C3' |
H3' |
1.100 |
1.090 |
| O3' |
HO3' |
0.950 |
0.968 |
| C4' |
H4' |
1.100 |
1.090 |
| C5' |
H5' |
1.100 |
1.090 |
| C5' |
H5'A |
1.100 |
1.090 |
| O5' |
HO5' |
0.950 |
0.967 |
Bond Angles for 2TU
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
121.4 |
120.6 |
| C2 |
N1 |
C1' |
117.0 |
119.7 |
| N1 |
C2 |
S2 |
118.7 |
119.5 |
| N1 |
C2 |
N3 |
119.6 |
120.9 |
| C6 |
N1 |
C1' |
121.6 |
119.7 |
| N1 |
C6 |
C5 |
119.0 |
119.7 |
| N1 |
C6 |
H6 |
120.5 |
120.1 |
| N1 |
C1' |
C2' |
114.2 |
110.6 |
| N1 |
C1' |
O4' |
108.5 |
110.6 |
| N1 |
C1' |
H1' |
105.9 |
110.5 |
| S2 |
C2 |
N3 |
121.7 |
119.6 |
| C2 |
N3 |
C4 |
120.4 |
120.3 |
| C2 |
N3 |
HN3 |
119.8 |
119.9 |
| N3 |
C4 |
O4 |
120.0 |
120.4 |
| N3 |
C4 |
C5 |
119.9 |
119.4 |
| C4 |
N3 |
HN3 |
119.8 |
119.8 |
| O4 |
C4 |
C5 |
120.0 |
120.2 |
| C4 |
C5 |
C6 |
119.6 |
119.1 |
| C4 |
C5 |
H5 |
120.2 |
120.5 |
| C6 |
C5 |
H5 |
120.2 |
120.4 |
| C5 |
C6 |
H6 |
120.5 |
120.2 |
| C2' |
C1' |
O4' |
106.2 |
103.5 |
| C1' |
C2' |
O2' |
111.4 |
110.9 |
| C1' |
C2' |
C3' |
101.3 |
102.1 |
| C2' |
C1' |
H1' |
108.3 |
110.7 |
| C1' |
C2' |
H2' |
115.6 |
110.9 |
| C1' |
O4' |
C4' |
109.9 |
106.9 |
| O4' |
C1' |
H1' |
114.0 |
110.7 |
| O2' |
C2' |
C3' |
115.0 |
110.9 |
| O2' |
C2' |
H2' |
102.1 |
110.9 |
| C2' |
O2' |
HO2' |
109.5 |
114.0 |
| C2' |
C3' |
O3' |
109.7 |
110.5 |
| C2' |
C3' |
C4' |
102.7 |
104.2 |
| C3' |
C2' |
H2' |
112.0 |
110.9 |
| C2' |
C3' |
H3' |
113.5 |
110.5 |
| O3' |
C3' |
C4' |
109.0 |
110.5 |
| O3' |
C3' |
H3' |
107.7 |
110.4 |
| C3' |
O3' |
HO3' |
109.5 |
114.0 |
| C3' |
C4' |
O4' |
105.9 |
107.3 |
| C3' |
C4' |
C5' |
115.2 |
109.9 |
| C4' |
C3' |
H3' |
114.2 |
110.6 |
| C3' |
C4' |
H4' |
108.1 |
109.9 |
| O4' |
C4' |
C5' |
109.2 |
109.8 |
| O4' |
C4' |
H4' |
114.1 |
109.9 |
| C4' |
C5' |
O5' |
112.0 |
109.5 |
| C5' |
C4' |
H4' |
104.6 |
110.0 |
| C4' |
C5' |
H5' |
108.6 |
109.4 |
| C4' |
C5' |
H5'A |
108.6 |
109.5 |
| O5' |
C5' |
H5' |
108.6 |
109.5 |
| O5' |
C5' |
H5'A |
108.7 |
109.5 |
| C5' |
O5' |
HO5' |
109.5 |
114.0 |
| H5' |
C5' |
H5'A |
110.3 |
109.5 |
Torsion Angles for 2TU
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
N1 |
C2 |
C1' |
181.5 |
180.3 |
| C2 |
N1 |
C6 |
C5 |
359.3 |
360.0 |
| C2 |
N1 |
C6 |
H6 |
179.3 |
180.0 |
| C2 |
N1 |
C1' |
C2' |
156.0 |
115.0 |
| C2 |
N1 |
C1' |
O4' |
274.1 |
229.1 |
| C2 |
N1 |
C1' |
H1' |
36.9 |
352.1 |
| S2 |
C2 |
N1 |
N3 |
181.2 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
1.2 |
0.1 |
| N1 |
C2 |
N3 |
HN3 |
181.2 |
180.0 |
| C2 |
N1 |
C6 |
C1' |
178.4 |
179.7 |
| C6 |
N1 |
C2 |
S2 |
181.1 |
180.0 |
| C6 |
N1 |
C2 |
N3 |
359.9 |
360.0 |
| C6 |
N1 |
C1' |
C2' |
334.5 |
294.8 |
| C6 |
N1 |
C1' |
O4' |
92.6 |
48.8 |
| C6 |
N1 |
C1' |
H1' |
215.4 |
171.8 |
| C4 |
C5 |
C6 |
N1 |
0.4 |
0.0 |
| N1 |
C6 |
C5 |
H5 |
180.5 |
180.1 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
180.0 |
| C2 |
N1 |
C1' |
C6 |
181.5 |
180.3 |
| C1' |
N1 |
C2 |
S2 |
359.6 |
359.7 |
| C1' |
N1 |
C2 |
N3 |
178.4 |
179.7 |
| C1' |
N1 |
C6 |
C5 |
180.9 |
180.3 |
| C1' |
N1 |
C6 |
H6 |
0.9 |
0.3 |
| C2' |
C1' |
N1 |
O4' |
241.8 |
246.0 |
| N1 |
C1' |
C2' |
O2' |
276.2 |
273.7 |
| N1 |
C1' |
C2' |
C3' |
153.5 |
155.5 |
| C2' |
C1' |
N1 |
H1' |
119.1 |
123.0 |
| N1 |
C1' |
C2' |
H2' |
32.2 |
37.3 |
| N1 |
C1' |
O4' |
C4' |
218.6 |
201.4 |
| O4' |
C1' |
N1 |
H1' |
237.2 |
237.0 |
| S2 |
C2 |
N1 |
C6 |
181.1 |
180.0 |
| S2 |
C2 |
N1 |
C1' |
359.6 |
359.7 |
| N1 |
C2 |
S2 |
N3 |
178.8 |
180.0 |
| S2 |
C2 |
N3 |
C4 |
179.9 |
180.0 |
| S2 |
C2 |
N3 |
HN3 |
359.9 |
360.0 |
| N3 |
C2 |
N1 |
C6 |
359.9 |
360.0 |
| N3 |
C2 |
N1 |
C1' |
178.4 |
179.7 |
| N1 |
C2 |
N3 |
S2 |
181.3 |
180.0 |
| C2 |
N3 |
C4 |
O4 |
179.0 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
358.6 |
360.0 |
| C4 |
N3 |
C2 |
HN3 |
180.0 |
180.0 |
| C2 |
N3 |
C4 |
HN3 |
180.0 |
180.0 |
| O4 |
C4 |
N3 |
C5 |
180.4 |
180.1 |
| N3 |
C4 |
C5 |
C6 |
0.6 |
0.0 |
| N3 |
C4 |
C5 |
H5 |
180.5 |
180.0 |
| N3 |
C4 |
O4 |
C5 |
179.6 |
179.9 |
| O4 |
C4 |
N3 |
HN3 |
359.0 |
0.0 |
| O4 |
C4 |
C5 |
C6 |
180.2 |
180.0 |
| O4 |
C4 |
C5 |
H5 |
0.1 |
359.9 |
| N1 |
C6 |
C5 |
C4 |
0.4 |
0.0 |
| N3 |
C4 |
C5 |
O4 |
180.4 |
180.1 |
| C5 |
C4 |
N3 |
HN3 |
178.6 |
180.0 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
H6 |
180.5 |
180.0 |
| C5 |
C6 |
N1 |
C1' |
180.9 |
180.3 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
| N1 |
C1' |
C2' |
O4' |
119.5 |
118.4 |
| N1 |
C1' |
C2' |
H1' |
242.3 |
237.1 |
| C2' |
C1' |
O4' |
C4' |
341.8 |
319.9 |
| O4' |
C1' |
C2' |
H1' |
122.8 |
118.7 |
| O2' |
C2' |
C1' |
C3' |
122.7 |
118.1 |
| O2' |
C2' |
C1' |
H2' |
244.1 |
236.4 |
| C1' |
C2' |
O2' |
HO2' |
180.0 |
180.0 |
| C1' |
C2' |
C3' |
O3' |
79.6 |
97.8 |
| C1' |
C2' |
C3' |
C4' |
323.8 |
339.1 |
| C3' |
C2' |
C1' |
H2' |
121.3 |
118.2 |
| C1' |
C2' |
C3' |
H3' |
200.1 |
220.3 |
| N1 |
C1' |
O4' |
C2' |
236.9 |
241.5 |
| N1 |
C1' |
O4' |
H1' |
117.8 |
122.9 |
| O4' |
C1' |
C2' |
O2' |
156.8 |
155.2 |
| O4' |
C1' |
C2' |
C3' |
34.0 |
37.1 |
| C2' |
C1' |
O4' |
H1' |
240.9 |
241.4 |
| O4' |
C1' |
C2' |
H2' |
272.7 |
278.8 |
| C3' |
C4' |
O4' |
C1' |
354.5 |
26.5 |
| C1' |
O4' |
C4' |
C5' |
119.0 |
145.9 |
| C1' |
O4' |
C4' |
H4' |
235.7 |
267.1 |
| O2' |
C2' |
C1' |
O4' |
156.8 |
155.2 |
| C1' |
C2' |
O2' |
C3' |
245.5 |
247.4 |
| O2' |
C2' |
C1' |
H1' |
34.0 |
36.5 |
| C1' |
C2' |
O2' |
H2' |
123.9 |
123.7 |
| O2' |
C2' |
C3' |
O3' |
319.4 |
339.7 |
| O2' |
C2' |
C3' |
C4' |
203.6 |
221.0 |
| C3' |
C2' |
O2' |
H2' |
238.5 |
236.3 |
| O2' |
C2' |
C3' |
H3' |
79.8 |
102.2 |
| C3' |
C2' |
C1' |
O4' |
34.0 |
37.1 |
| C1' |
C2' |
C3' |
O2' |
120.2 |
118.1 |
| C3' |
C2' |
C1' |
H1' |
271.2 |
278.4 |
| C1' |
C2' |
C3' |
H2' |
236.2 |
241.7 |
| O2' |
C2' |
C3' |
H2' |
116.0 |
123.6 |
| C3' |
C2' |
O2' |
HO2' |
294.5 |
292.6 |
| O3' |
C3' |
C2' |
C4' |
115.8 |
118.7 |
| O3' |
C3' |
C2' |
H3' |
239.5 |
237.5 |
| C2' |
C3' |
O3' |
HO3' |
180.0 |
180.0 |
| C2' |
C3' |
C4' |
O4' |
26.6 |
358.0 |
| C2' |
C3' |
C4' |
C5' |
265.8 |
238.6 |
| C4' |
C3' |
C2' |
H3' |
123.8 |
118.8 |
| C2' |
C3' |
C4' |
H4' |
149.3 |
117.4 |
| C2' |
C3' |
O3' |
C4' |
248.3 |
245.2 |
| O3' |
C3' |
C2' |
H2' |
203.4 |
216.0 |
| C2' |
C3' |
O3' |
H3' |
124.0 |
122.6 |
| O3' |
C3' |
C4' |
O4' |
270.3 |
239.3 |
| O3' |
C3' |
C4' |
C5' |
149.6 |
119.9 |
| C4' |
C3' |
O3' |
H3' |
235.7 |
237.4 |
| O3' |
C3' |
C4' |
H4' |
33.0 |
358.7 |
| C1' |
O4' |
C4' |
C3' |
354.5 |
26.5 |
| C2' |
C3' |
C4' |
O3' |
116.3 |
118.7 |
| C4' |
C3' |
C2' |
H2' |
87.6 |
97.3 |
| C2' |
C3' |
C4' |
H3' |
236.7 |
241.2 |
| O3' |
C3' |
C4' |
H3' |
120.4 |
122.5 |
| C4' |
C3' |
O3' |
HO3' |
291.7 |
294.8 |
| O4' |
C4' |
C3' |
C5' |
120.8 |
119.4 |
| O4' |
C4' |
C3' |
H4' |
237.3 |
240.6 |
| C3' |
C4' |
C5' |
O5' |
193.7 |
185.0 |
| C5' |
C4' |
C3' |
H4' |
116.6 |
121.2 |
| C3' |
C4' |
C5' |
H5' |
313.7 |
305.0 |
| C3' |
C4' |
C5' |
H5'A |
73.7 |
64.9 |
| C4' |
O4' |
C1' |
H1' |
100.9 |
78.5 |
| C3' |
C4' |
O4' |
C5' |
235.4 |
240.6 |
| O4' |
C4' |
C3' |
H3' |
149.9 |
116.7 |
| C3' |
C4' |
O4' |
H4' |
118.7 |
119.4 |
| O4' |
C4' |
C5' |
O5' |
74.8 |
67.2 |
| C5' |
C4' |
O4' |
H4' |
243.3 |
238.8 |
| O4' |
C4' |
C5' |
H5' |
194.8 |
187.2 |
| O4' |
C4' |
C5' |
H5'A |
314.8 |
307.2 |
| C3' |
C4' |
C5' |
O4' |
118.9 |
117.8 |
| C5' |
C4' |
C3' |
H3' |
29.1 |
357.4 |
| C3' |
C4' |
C5' |
H4' |
241.5 |
238.9 |
| O4' |
C4' |
C5' |
H4' |
122.6 |
121.1 |
| O5' |
C5' |
C4' |
H5' |
240.0 |
240.0 |
| O5' |
C5' |
C4' |
H5'A |
120.0 |
120.1 |
| C4' |
C5' |
O5' |
HO5' |
180.0 |
180.0 |
| H5' |
C5' |
C4' |
H5'A |
240.0 |
240.0 |
| O5' |
C5' |
C4' |
H4' |
312.2 |
306.1 |
| C4' |
C5' |
O5' |
H5' |
120.0 |
120.0 |
| C4' |
C5' |
O5' |
H5'A |
240.0 |
239.9 |
| H5' |
C5' |
O5' |
H5'A |
120.0 |
120.0 |
| C2 |
N3 |
HN3 |
C4 |
180.0 |
180.0 |
| HN3 |
N3 |
C4 |
O4 |
359.0 |
0.0 |
| HN3 |
N3 |
C4 |
C5 |
178.6 |
180.0 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
| H5 |
C5 |
C6 |
H6 |
0.5 |
0.0 |
| H6 |
C6 |
N1 |
C1' |
0.9 |
0.3 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
H5 |
0.5 |
0.0 |
| N1 |
C1' |
H1' |
C2' |
122.9 |
122.9 |
| N1 |
C1' |
H1' |
O4' |
240.8 |
237.1 |
| C2' |
C1' |
H1' |
O4' |
117.9 |
114.2 |
| H1' |
C1' |
C2' |
O2' |
34.0 |
36.5 |
| H1' |
C1' |
C2' |
C3' |
271.2 |
278.4 |
| H1' |
C1' |
C2' |
H2' |
149.9 |
160.2 |
| H1' |
C1' |
O4' |
C4' |
100.9 |
78.5 |
| H2' |
C2' |
C1' |
O4' |
272.7 |
278.8 |
| C1' |
C2' |
H2' |
O2' |
238.9 |
236.4 |
| C1' |
C2' |
H2' |
C3' |
115.4 |
112.7 |
| H2' |
C2' |
C1' |
H1' |
149.9 |
160.2 |
| O2' |
C2' |
H2' |
C3' |
236.4 |
236.4 |
| H2' |
C2' |
O2' |
HO2' |
56.1 |
56.3 |
| H2' |
C2' |
C3' |
O3' |
203.4 |
216.0 |
| H2' |
C2' |
C3' |
C4' |
87.6 |
97.3 |
| H2' |
C2' |
C3' |
H3' |
323.8 |
338.5 |
| HO2' |
O2' |
C2' |
C3' |
294.5 |
292.6 |
| HO2' |
O2' |
C2' |
H2' |
56.1 |
56.3 |
| C2' |
C3' |
H3' |
O3' |
238.4 |
237.4 |
| C2' |
C3' |
H3' |
C4' |
117.2 |
114.9 |
| H3' |
C3' |
C2' |
H2' |
323.8 |
338.5 |
| O3' |
C3' |
H3' |
C4' |
238.8 |
237.4 |
| H3' |
C3' |
O3' |
HO3' |
56.1 |
57.5 |
| H3' |
C3' |
C4' |
O4' |
149.9 |
116.7 |
| H3' |
C3' |
C4' |
C5' |
29.1 |
357.4 |
| H3' |
C3' |
C4' |
H4' |
272.6 |
236.2 |
| HO3' |
O3' |
C3' |
C4' |
291.7 |
294.8 |
| HO3' |
O3' |
C3' |
H3' |
56.1 |
57.5 |
| C3' |
C4' |
H4' |
O4' |
242.5 |
242.2 |
| C3' |
C4' |
H4' |
C5' |
123.2 |
121.1 |
| H4' |
C4' |
C3' |
H3' |
272.6 |
236.2 |
| O4' |
C4' |
H4' |
C5' |
240.7 |
238.9 |
| H4' |
C4' |
C5' |
O5' |
312.2 |
306.1 |
| H4' |
C4' |
C5' |
H5' |
72.2 |
66.1 |
| H4' |
C4' |
C5' |
H5'A |
192.2 |
186.1 |
| C4' |
C5' |
H5' |
O5' |
238.0 |
240.0 |
| H5' |
C5' |
C4' |
H4' |
72.2 |
66.1 |
| C4' |
C5' |
H5' |
H5'A |
118.9 |
120.0 |
| O5' |
C5' |
H5' |
H5'A |
241.0 |
240.0 |
| H5' |
C5' |
O5' |
HO5' |
60.0 |
60.1 |
| C4' |
C5' |
H5'A |
O5' |
122.1 |
120.0 |
| H5'A |
C5' |
C4' |
H4' |
192.2 |
186.1 |
| C4' |
C5' |
H5'A |
H5' |
241.0 |
240.0 |
| O5' |
C5' |
H5'A |
H5' |
119.0 |
120.0 |
| H5'A |
C5' |
O5' |
HO5' |
300.0 |
300.1 |
| HO5' |
O5' |
C5' |
H5' |
60.0 |
60.1 |
| HO5' |
O5' |
C5' |
H5'A |
300.0 |
300.1 |