PDB Chemical Component 0R8

Ideal Model

Chemical Description

Name [(2S,5R)-5-{4-amino-5-[(4-ethynylphenyl)ethynyl]-2-oxopyrimidin-1(2H)-yl}tetrahydrofuran-2-yl]methyl dihydrogen phosphate
Formula C19 H18 N3 O6 P
Formal charge 0
Molecular weight 415.336 g/mol
Component type DNA LINKING
Nonstandard Parent Id DC

Chemical features

Atom count 47
Chiral atom count 2
Chiral atoms C1' C4'
Observed leaving atoms OP3 HOP3
Bond count 49
Aromatic bond count 6

Chemical Identifiers

Systematic name (ACDLabs) [(2S,5R)-5-{4-amino-5-[(4-ethynylphenyl)ethynyl]-2-oxopyrimidin-1(2H)-yl}tetrahydrofuran-2-yl]methyl dihydrogen phosphate
Systematic name (OpenEye OEToolkits) [(2S,5R)-5-[4-azanyl-5-[2-(4-ethynylphenyl)ethynyl]-2-oxidanylidene-pyrimidin-1-yl]oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1C#Cc2ccc(cc2)C#C)[C@H]3CC[C@@H](CO[P](O)(O)=O)O3
SMILES (CACTVS) NC1=NC(=O)N(C=C1C#Cc2ccc(cc2)C#C)[CH]3CC[CH](CO[P](O)(O)=O)O3
Stereo SMILES (OpenEye) C#Cc1ccc(cc1)C#CC2=CN(C(=O)N=C2N)[C@H]3CC[C@H](O3)COP(=O)(O)O
InChI descriptor InChI=1S/C19H18N3O6P/c1-2-13-3-5-14(6-4-13)7-8-15-11-22(19(23)21-18(15)20)17-10-9-16(28-17)12-27-29(24,25)26/h1,3-6,11,16-17H,9-10,12H2,(H2,20,21,23)(H2,24,25,26)/t16-,17+/m0/s1
InChIKey descriptor IXTAGUCYLSQFGM-DLBZAZTESA-N

Status Information

Last modified 2013-04-19
Created 2012-04-27
Release status REL
Model PDB code 4ELV
Processing site RCSB