PDB Chemical Component 0R8

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 0R8

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP2 P 1.586 1.611
C5' C4' 1.548 1.530
C5' O5' 1.425 1.429
C4' C3' 1.540 1.549
C4' O4' 1.440 1.437
C3' C2' 1.546 1.556
C2' C1' 1.548 1.544
O5' P 1.611 1.610
P OP1 1.594 1.479
O4' C1' 1.424 1.432
C1' N1 1.453 1.464
N1 C6 1.356 1.360
N1 C2 1.342 1.343
O2 C2 1.215 1.219
C6 C5 1.339 1.382
C2 N3 1.434 1.331
C5 C1 1.436 1.431
C5 C4 1.471 1.467
N3 C4 1.270 1.326
C1 C3 1.200 1.174
C4 N4 1.349 1.374
C3 C01 1.437 1.432
C02 C01 1.397 1.399
C02 C03 1.398 1.366
C01 C 1.401 1.400
C03 C04 1.402 1.398
C C05 1.397 1.366
C04 C05 1.400 1.397
C04 C7 1.441 1.432
C7 C8 1.204 1.174
OP2 HOP2 0.950 0.967
C1' H1' 1.100 1.090
C6 H6 1.080 1.080
N4 H41 1.000 0.970
N4 H42 1.000 0.969
C4' H7 1.099 1.090
C3' H3' 1.100 1.091
C3' H3'' 1.100 1.090
C2' H2' 1.100 1.090
C2' H2'' 1.100 1.090
C5' H5' 1.100 1.090
C5' H5'' 1.100 1.090
C02 H14 1.080 1.080
C03 H15 1.080 1.080
C05 H16 1.079 1.079
C H17 1.080 1.080
C8 H18 1.060 1.050
P OP3   1.609
OP3 HOP3   0.968

Bond Angles for 0R8

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP3   109.5
C5' C4' H7 109.4 110.3
C4' C3' C2' 100.5 101.0
C3' C4' H7 109.5 110.3
C4' C3' H3' 111.7 111.1
C4' C3' H3'' 111.7 111.2
C2' C3' H3' 111.7 111.1
C2' C3' H3'' 111.7 111.1
C3' C2' H2' 111.5 110.8
C3' C2' H2'' 111.5 110.8
C2' C1' H1' 107.7 109.8
O5' P OP1 109.8 109.5
O5' P OP3   109.4
OP1 P OP3   109.5
O4' C1' H1' 109.3 109.8
C1' N1 C6 122.5 119.5
C1' N1 C2 116.8 119.4
N1 C1' H1' 108.9 109.8
C6 N1 C2 120.5 121.1
N1 C6 C5 119.1 118.9
N1 C6 H6 120.4 120.5
N1 C2 N3 120.2 122.2
C6 C5 C1 121.4 121.0
C6 C5 C4 121.6 118.0
C5 C6 H6 120.5 120.6
C1 C5 C4 117.0 121.0
C5 C1 C3 174.3 179.9
C5 C4 N3 117.2 118.8
C5 C4 N4 121.0 120.6
N3 C4 N4 121.7 120.6
C1 C3 C01 172.5 180.0
C4 N4 H41 120.0 120.0
C4 N4 H42 120.0 120.0
C3 C01 C 117.5 120.0
C02 C01 C 120.4 119.9
C02 C03 C04 119.6 120.0
C03 C02 H14 120.1 120.0
C02 C03 H15 120.2 120.0
C01 C C05 120.0 120.0
C01 C H17 120.0 120.0
C03 C04 C05 120.6 120.1
C03 C04 C7 120.3 120.0
C04 C03 H15 120.2 120.0
C C05 H16 120.2 120.0
C05 C04 C7 119.1 120.0
C04 C05 H16 120.3 120.0
C04 C7 C8 178.8 180.0
C7 C8 H18 180.0 180.0
H41 N4 H42 120.0 120.1
H3' C3' H3'' 109.5 111.0
H2' C2' H2'' 109.5 110.9
H5' C5' H5'' 109.5 109.5
P OP3 HOP3   114.0

Torsion Angles for 0R8

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O5' P OP2 OP3   119.9
OP1 P OP2 OP3   240.0
OP2 P OP3 HOP3   300.0
C3' C4' C5' H7 237.3 237.9
C5' C4' C3' H3' 316.6 322.6
C5' C4' C3' H3'' 79.6 86.7
C5' O5' P OP3   185.0
C5' C4' C3' H7 122.7 122.2
C2' C3' C4' H3' 241.5 242.1
C2' C3' C4' H3'' 118.5 117.9
C4' C3' C2' H2' 158.8 275.9
C4' C3' C2' H2'' 281.5 152.3
H3' C3' C4' H3'' 237.0 235.9
C4' O4' C1' H1' 113.1 117.9
C2' C3' C4' H7 75.4 82.5
C4' C3' C2' H3' 118.5 117.9
C4' C3' C2' H3'' 241.5 242.0
C3' C2' C1' H1' 218.9 219.1
H3' C3' C2' H3'' 123.0 124.1
H2' C2' C3' H2'' 237.3 123.6
O4' C1' C2' H1' 116.7 119.5
N1 C1' C2' H1' 238.3 239.1
OP2 P O5' OP3   240.0
OP1 P O5' OP3   120.1
O5' P OP3 HOP3   180.1
OP2 P OP1 OP3   120.0
O5' P OP1 OP3   240.0
OP1 P OP3 HOP3   60.0
C2' C1' O4' H1' 244.4 240.5
N1 C1' O4' H1' 119.6 120.9
C2' C1' N1 H1' 121.0 120.9
O4' C1' N1 H1' 240.2 239.1
C6 N1 C1' C2 176.1 180.3
C1' N1 C6 C5 183.5 180.0
C1' N1 C6 H6 3.4 359.8
C1' N1 C2 N3 176.6 179.8
C1' N1 C6 C2 184.0 179.7
C6 N1 C1' H1' 144.6 146.7
C6 N1 C2 N3 0.4 359.5
N1 C6 C5 C1 180.4 180.0
N1 C6 C5 C4 0.7 359.9
C5 C6 N1 H6 180.0 180.2
C1' N1 C2 C6 176.2 180.3
C2 N1 C1' H1' 328.5 326.4
C2 N1 C6 C5 359.4 0.3
C2 N1 C6 H6 179.4 180.2
C5 C6 N1 C2 359.4 0.3
N1 C6 C5 H6 180.0 179.8
C1 C5 C6 C4 179.7 180.1
C6 C5 C1 C3 145.9 254.7
C6 C5 C4 N3 359.4 0.1
C6 C5 C4 N4 176.4 180.0
C2 N3 C4 N4 183.4 179.8
C6 C5 C1 C4 180.3 179.9
C1 C5 C6 H6 0.4 0.2
C1 C5 C4 N3 179.6 180.0
C1 C5 C4 N4 356.6 359.9
C5 C1 C3 C01 354.9 218.5
C6 C5 C4 C1 179.7 180.1
C4 C5 C6 H6 180.7 180.1
C4 C5 C1 C3 325.6 74.9
N3 C4 C5 N4 183.0 180.1
C5 C4 N4 H41 183.1 0.0
C5 C4 N4 H42 3.2 180.1
N1 C2 N3 C4 359.7 0.5
C5 C4 N3 N4 177.0 179.9
N3 C4 N4 H41 360.0 180.0
N3 C4 N4 H42 180.0 360.0
C3 C1 C5 C4 325.6 74.9
C1 C3 C01 C 355.3 66.6
C5 C4 N4 N3 183.1 180.1
H41 N4 C4 H42 180.0 180.0
C02 C01 C3 C 180.3 180.3
C3 C01 C C05 180.1 179.7
C3 C01 C H17 0.1 0.1
C3 C01 C02 C 179.7 179.7
C02 C01 C C05 359.8 359.3
C02 C01 C H17 179.8 179.7
C03 C02 C01 C 360.0 0.3
C02 C03 C04 C05 359.6 360.0
C02 C03 C04 C7 179.7 180.0
C04 C03 C02 H15 180.0 180.0
C01 C C05 H16 180.1 180.4
C04 C03 C02 H14 180.4 180.0
C02 C03 C04 H15 180.0 180.0
C05 C04 C03 C7 179.9 180.0
C03 C04 C05 H16 180.2 180.0
C03 C04 C7 C8 180.1 293.0
C01 C C05 H17 180.0 180.4
C C05 C04 C7 180.1 179.7
C04 C05 C H16 180.0 180.3
C01 C C05 C04 0.1 0.7
C03 C04 C05 C7 180.1 180.0
C05 C04 C03 H15 179.6 180.0
C C05 C04 H16 180.0 179.7
C05 C04 C7 C8 0.2 113.0
C03 C04 C7 C05 179.9 180.0
C7 C04 C03 H15 359.7 0.0
C7 C04 C05 H16 0.1 360.0
C04 C7 C8 H18 208.3 249.7
HOP2 OP2 P OP3   300.0
H1' C1' N1 C6 144.6 146.7
H1' C1' N1 C2 328.5 326.4
H6 C6 N1 C2 179.4 180.2
N1 C6 H6 C5 180.0 180.2
H6 C6 C5 C1 0.4 0.2
H6 C6 C5 C4 180.7 180.1
C4 N4 H41 H42 180.0 180.0
C4 N4 H42 H41 180.0 180.0
H7 C4' C3' C2' 75.4 82.5
H7 C4' C3' H3' 194.0 200.4
H7 C4' C3' H3'' 316.9 324.5
C4' C3' H3' C2' 248.4 248.4
H3' C3' C4' H7 194.0 200.4
C4' C3' H3' H3'' 124.2 124.2
C2' C3' H3' H3'' 235.8 235.8
H3' C3' C2' H2' 40.2 158.0
H3' C3' C2' H2'' 162.9 34.4
C4' C3' H3'' C2' 111.6 111.6
H3'' C3' C4' H7 316.9 324.5
C4' C3' H3'' H3' 235.8 235.8
C2' C3' H3'' H3' 124.2 124.2
H3'' C3' C2' H2' 277.3 33.9
H3'' C3' C2' H2'' 40.0 270.3
H2' C2' C3' H3' 40.2 158.0
H2' C2' C3' H3'' 277.3 33.9
C3' C2' H2' H2'' 123.9 236.4
H2' C2' C1' H1' 100.3 337.2
H2'' C2' C3' H3' 162.9 34.4
H2'' C2' C3' H3'' 40.0 270.3
C3' C2' H2'' H2' 236.1 123.6
H2'' C2' C1' H1' 337.6 101.0
H5' C5' C4' H7 294.6 187.1
H5'' C5' C4' H7 53.8 67.1
H14 C02 C01 C 179.9 180.4
H14 C02 C03 C04 180.4 180.0
H14 C02 C03 H15 0.4 360.0
C02 C03 H15 C04 180.0 180.0
H15 C03 C02 H14 0.4 360.0
H15 C03 C04 C05 179.6 180.0
H15 C03 C04 C7 359.7 0.0
H16 C05 C04 C7 0.1 360.0
C01 C H17 C05 180.0 179.6
H17 C C05 H16 0.1 360.0
O5' P OP3 OP1   120.1