PDB Chemical Component 03F

Ideal Model

Chemical Description

Name (9Z)-N-[(2S,3R,4E)-1-(beta-D-glucopyranosyloxy)-3-hydroxyoctadec-4-en-2-yl]octadec-9-enamide
Synonyms N-(9Z-octadecenoyl)-1--glucosyl-sphing-4-enine
Formula C42 H79 N O8
Formal charge 0
Molecular weight 726.079 g/mol
Component type NON-POLYMER

Chemical features

Atom count 130
Chiral atom count 7
Chiral atoms C2 C3 C1A C2A C3A C4A C5M
Bond count 130
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) (9Z)-N-[(2S,3R,4E)-1-(beta-D-glucopyranosyloxy)-3-hydroxyoctadec-4-en-2-yl]octadec-9-enamide
Systematic name (OpenEye OEToolkits) (Z)-N-[(E,2S,3R)-1-[(2R,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-octadec-4-en-2-yl]octadec-9-enamide

Chemical Descriptors

Stereo SMILES (CACTVS) CCCCCCCCCCCCC/C=C/[C@@H](O)[C@H](CO[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O)NC(=O)CCCCCCC\C=C/CCCCCCCC
SMILES (CACTVS) CCCCCCCCCCCCCC=C[CH](O)[CH](CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O)NC(=O)CCCCCCCC=CCCCCCCCC
Stereo SMILES (OpenEye) CCCCCCCCCCCCC/C=C/[C@H]([C@H](CO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O)NC(=O)CCCCCCC/C=C\CCCCCCCC)O
InChI descriptor InChI=1S/C42H79NO8/c1-3-5-7-9-11-13-15-17-18-20-22-24-26-28-30-32-38(46)43-35(34-50-42-41(49)40(48)39(47)37(33-44)51-42)36(45)31-29-27-25-23-21-19-16-14-12-10-8-6-4-2/h17-18,29,31,35-37,39-42,44-45,47-49H,3-16,19-28,30,32-34H2,1-2H3,(H,43,46)/b18-17-,31-29+/t35-,36+,37+,39+,40-,41+,42+/m0/s1
InChIKey descriptor MVGFIPNJBNBHNC-HVFXMTMESA-N

Status Information

Last modified 2020-06-17
Created 2011-08-21
Release status REL
Model PDB code 3S0K
Processing site RCSB