Atom Nomenclature for 03F

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 03F

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
N2 N2
C3 C3
O3 O3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
C1A C1A
O1A O1A
C2A C2A
O2A O2A
C3A C3A
O3A O3A
C4A C4A
O4A O4A
O5A O5A
C5M C5M
C6A C6A
O6A O6A
CAA CAA
OAA OAA
CAB CAB
CAC CAC
CAD CAD
CAE CAE
CAF CAF
CAG CAG
CAH CAH
CAI CAI
CAJ CAJ
CAK CAK
CAL CAL
CAM CAM
CAN CAN
CAO CAO
CAP CAP
CAQ CAQ
CAR CAR
HO4A HO4A
H2 H2
HO3A HO3A
HO2A HO2A
H3 H3
H4 H4
H10 H10
H10A H10A
H1 H1
H11 H11
H1A H1A
H11A H11A
H1AA H1AA
H12 H12
H12A H12A
H1AR H1AR
H2A H2A
H13 H13
H13A H13A
H3A H3A
H14 H14
H14A H14A
H4A H4A
H15 H15
H5 H5
H15A H15A
HO5A HO5A
H5M H5M
H6 H6
H16 H16
H6A H6A
H16A H16A
H7 H7
H17 H17
H7A H7A
H17A H17A
H8 H8
H18 H18
H8A H8A
H18A H18A
H18B H18B
H9 H9
H9A H9A
H6AA H6AA
H6AB H6AB
HAB HAB
HABA HABA
HAC HAC
HACA HACA
HAD HAD
HADA HADA
HAE HAE
HAEA HAEA
HAF HAF
HAFA HAFA
HAG HAG
HAGA HAGA
HAH HAH
HAHA HAHA
HAI HAI
HAJ HAJ
HAK HAK
HAKA HAKA
HAL HAL
HALA HALA
HAM HAM
HAMA HAMA
HAN HAN
HN2 HN2
HANA HANA
HAO HAO
HAOA HAOA
HO3 HO3
HAP HAP
HAPA HAPA
HAQ HAQ
HAQA HAQA
HAR HAR
HARA HARA