PDB Chemical Component XUA

Ideal Model

Chemical Description

Name 2'-Se-methyl-2'-selenoadenosine 5'-(dihydrogen phosphate)
Formula C11 H16 N5 O6 P Se
Formal charge 0
Molecular weight 424.208 g/mol
Component type DNA LINKING
Nonstandard Parent Id DA

Chemical features

Atom count 40
Chiral atom count 4
Chiral atoms C1' C2' C3' C4'
Observed leaving atoms OP3 HO3'
Bond count 42
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 2'-Se-methyl-2'-selenoadenosine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-hydroxy-4-methylselanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) C[Se][C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1n2cnc3c(N)ncnc23
SMILES (CACTVS) C[Se][CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1n2cnc3c(N)ncnc23
Stereo SMILES (OpenEye) C[Se][C@@H]1[C@@H]([C@H](O[C@H]1n2cnc3c2ncnc3N)COP(=O)(O)O)O
InChI descriptor InChI=1S/C11H16N5O6PSe/c1-24-8-7(17)5(2-21-23(18,19)20)22-11(8)16-4-15-6-9(12)13-3-14-10(6)16/h3-5,7-8,11,17H,2H2,1H3,(H2,12,13,14)(H2,18,19,20)/t5-,7-,8-,11-/m1/s1
InChIKey descriptor BDEZXTBJEQTGCH-IOSLPCCCSA-N

Status Information

Last modified 2011-06-04
Created 2009-07-27
Release status REL
Model PDB code 3IFF
Processing site RCSB