PDB Chemical Component VNP

Ideal Model

Chemical Description

Name 3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-5-(2-{[HYDROXY(PHOSPHONOAMINO)PHOSPHORYL]OXY}ETHYL)-4-METHYL-1,3-THIAZOL-3-I UM
Synonyms THIAMIN-PNP; [2-[3-[(4-AMINO-2-METHYL-PYRIMIDIN-5-YL)METHYL]-4-METHYL-1-THIA-3-AZON IACYCLOPENTA-2,4-DIEN-5-YL]ETHOXY-HYDROXY-PHOSPHORYL]AMINOPHOSPHONIC ACID
Formula C12 H20 N5 O6 P2 S
Formal charge 1
Molecular weight 424.330 g/mol
Component type NON-POLYMER

Chemical features

Atom count 46
Chiral atom count 1
Chiral atoms PB
Bond count 47
Aromatic bond count 11

Chemical Identifiers

Systematic name (ACDLabs) 3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonoamino)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium
Systematic name (OpenEye OEToolkits) [[2-[3-[(4-amino-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-1,3-thiazol-3-ium-5-yl]ethoxy-hydroxy-phosphoryl]amino]phosphonic acid

Chemical Descriptors

Stereo SMILES (CACTVS) Cc1ncc(C[n+]2csc(CCO[P@](O)(=O)N[P](O)(O)=O)c2C)c(N)n1
SMILES (CACTVS) Cc1ncc(C[n+]2csc(CCO[P](O)(=O)N[P](O)(O)=O)c2C)c(N)n1
Stereo SMILES (OpenEye) Cc1c(sc[n+]1Cc2cnc(nc2N)C)CCO[P@](=O)(NP(=O)(O)O)O
InChI descriptor InChI=1S/C12H19N5O6P2S/c1-8-11(3-4-23-25(21,22)16-24(18,19)20)26-7-17(8)6-10-5-14-9(2)15-12(10)13/h5,7H,3-4,6H2,1-2H3,(H5-,13,14,15,16,18,19,20,21,22)/p+1
InChIKey descriptor LWNISHVQCROCTL-UHFFFAOYSA-O

Status Information

Last modified 2020-06-17
Created 2006-03-14
Release status REL
Model PDB code 2G9Z
Processing site RCSB