PDB Chemical Component VA4

Ideal Model

Chemical Description

Name 5'-O-[(R)-{[(R)-[(R)-chloro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-2'-deoxyadenosine
Formula C11 H17 Cl N5 O11 P3
Formal charge 0
Molecular weight 523.654 g/mol
Component type NON-POLYMER

Chemical features

Atom count 48
Chiral atom count 4
Chiral atoms C1' C3' C3B C4'
Bond count 50
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 5'-O-[(R)-{[(R)-[(R)-chloro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-2'-deoxyadenosine
Systematic name (OpenEye OEToolkits) [(~{R})-[[[(2~{R},3~{S},5~{R})-5-(6-aminopurin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]-chloranyl-methyl]phosphonic acid

Chemical Descriptors

Stereo SMILES (CACTVS) Nc1ncnc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)[C@H](Cl)[P](O)(O)=O)O3
SMILES (CACTVS) Nc1ncnc2n(cnc12)[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)[CH](Cl)[P](O)(O)=O)O3
Stereo SMILES (OpenEye) c1nc(c2c(n1)n(cn2)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OP(=O)([C@@H](P(=O)(O)O)Cl)O)O)N
InChI descriptor InChI=1S/C11H17ClN5O11P3/c12-11(29(19,20)21)30(22,23)28-31(24,25)26-2-6-5(18)1-7(27-6)17-4-16-8-9(13)14-3-15-10(8)17/h3-7,11,18H,1-2H2,(H,22,23)(H,24,25)(H2,13,14,15)(H2,19,20,21)/t5-,6+,7+,11+/m0/s1
InChIKey descriptor VNWJWEHIFBMHOO-ZSJKCOSDSA-N

Status Information

Last modified 2018-06-29
Created 2018-03-22
Release status REL
Model PDB code 6CR8
Processing site RCSB