PDB Chemical Component UMP

Ideal Model

Chemical Description

Name 2'-DEOXYURIDINE 5'-MONOPHOSPHATE
Synonyms DUMP
Formula C9 H13 N2 O8 P
Formal charge 0
Molecular weight 308.182 g/mol
Component type NON-POLYMER

Chemical features

Atom count 33
Chiral atom count 3
Chiral atoms C1' C3' C4'
Observed leaving atoms OP3 HO3'
Bond count 34
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-5'-uridylic acid
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=CC(=O)NC2=O
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2C=CC(=O)NC2=O
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)COP(=O)(O)O)O
InChI descriptor InChI=1S/C9H13N2O8P/c12-5-3-8(11-2-1-7(13)10-9(11)14)19-6(5)4-18-20(15,16)17/h1-2,5-6,8,12H,3-4H2,(H,10,13,14)(H2,15,16,17)/t5-,6+,8+/m0/s1
InChIKey descriptor JSRLJPSBLDHEIO-SHYZEUOFSA-N

Status Information

Last modified 2012-05-02
Created 1999-07-08
Release status REL
Processing site RCSB