PDB Chemical Component UDX

Ideal Model

Chemical Description

Name URIDINE-5'-DIPHOSPHATE-XYLOPYRANOSE
Synonyms UDP-ALPHA-D-XYLOPYRANOSE
Formula C14 H22 N2 O16 P2
Formal charge 0
Molecular weight 536.276 g/mol
Component type NON-POLYMER

Chemical features

Atom count 56
Chiral atom count 10
Chiral atoms C1' C2' C3' C4' PB PA C4D C3D C2D C1D
Bond count 58
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3R,4S,5R)-3,4,5-trihydroxytetrahydro-2H-pyran-2-yl dihydrogen diphosphate (non-preferred name)
Systematic name (OpenEye OEToolkits) [[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl] hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@@H]1CO[C@H](O[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)[C@H](O)[C@H]1O
SMILES (CACTVS) O[CH]1CO[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH](O)[CH]1O
Stereo SMILES (OpenEye) C1[C@H]([C@@H]([C@H]([C@H](O1)O[P@](=O)(O)O[P@](=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)O)O)O
InChI descriptor InChI=1S/C14H22N2O16P2/c17-5-3-28-13(11(22)8(5)19)31-34(26,27)32-33(24,25)29-4-6-9(20)10(21)12(30-6)16-2-1-7(18)15-14(16)23/h1-2,5-6,8-13,17,19-22H,3-4H2,(H,24,25)(H,26,27)(H,15,18,23)/t5-,6-,8+,9-,10-,11-,12-,13-/m1/s1
InChIKey descriptor DQQDLYVHOTZLOR-OCIMBMBZSA-N

Status Information

Last modified 2021-03-01
Created 1999-12-13
Release status REL
Model PDB code 1DLI
Processing site RCSB