PDB Chemical Component U31

Ideal Model

Chemical Description

Name 2'-O-3-AMINOPROPYL 2'-DEOXYURIDINE-5'-MONOPHOSPHATE
Formula C12 H20 N3 O9 P
Formal charge 0
Molecular weight 381.276 g/mol
Component type RNA LINKING
Nonstandard Parent Id U

Chemical features

Atom count 45
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms O3P
Bond count 46
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-O-(3-aminopropyl)uridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3R,4R,5R)-4-(3-aminopropoxy)-5-(2,4-dioxopyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NCCCO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2C=CC(=O)NC2=O
SMILES (CACTVS) NCCCO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=CC(=O)NC2=O
Stereo SMILES (OpenEye) C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)OCCCN
InChI descriptor InChI=1S/C12H20N3O9P/c13-3-1-5-22-10-9(17)7(6-23-25(19,20)21)24-11(10)15-4-2-8(16)14-12(15)18/h2,4,7,9-11,17H,1,3,5-6,13H2,(H,14,16,18)(H2,19,20,21)/t7-,9-,10-,11-/m1/s1
InChIKey descriptor BYBLQLKEQYUZOM-QCNRFFRDSA-N

Status Information

Last modified 2011-06-04
Created 1999-12-02
Release status REL
Model PDB code 1D9D
Processing site RCSB