PDB Chemical Component THM

Ideal Model

Chemical Description

Name THYMIDINE
Synonyms DEOXYTHYMIDINE; 2'-DEOXYTHYMIDINE
Formula C10 H14 N2 O5
Formal charge 0
Molecular weight 242.229 g/mol
Component type DNA OH 5 prime terminus

Chemical features

Atom count 31
Chiral atom count 3
Chiral atoms C4' C3' C1'
Bond count 32
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) thymidine
Systematic name (OpenEye OEToolkits) 1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@H]2C[C@H](O)[C@@H](CO)O2)C(=O)NC1=O
SMILES (CACTVS) CC1=CN([CH]2C[CH](O)[CH](CO)O2)C(=O)NC1=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO)O
InChI descriptor InChI=1S/C10H14N2O5/c1-5-3-12(10(16)11-9(5)15)8-2-6(14)7(4-13)17-8/h3,6-8,13-14H,2,4H2,1H3,(H,11,15,16)/t6-,7+,8+/m0/s1
InChIKey descriptor IQFYYKKMVGJFEH-XLPZGREQSA-N

Status Information

Last modified 2017-08-21
Created 1999-07-08
Release status REL
Model PDB code 1KIM
Processing site EBI