PDB Chemical Component T5O

Ideal Model

Chemical Description

Name 2'-deoxy-5-methoxyuridine 5'-(dihydrogen phosphate)
Synonyms 5-methoxy-2'-deoxyuridine-5'-phosphate
Formula C10 H15 N2 O9 P
Formal charge 0
Molecular weight 338.208 g/mol
Component type DNA LINKING
Nonstandard Parent Id DU

Chemical features

Atom count 37
Chiral atom count 3
Chiral atoms C1' C3' C4'
Bond count 38
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-5-methoxyuridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-hydroxy-5-(5-methoxy-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) COC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O
SMILES (CACTVS) COC1=CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O
Stereo SMILES (OpenEye) COC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O
InChI descriptor InChI=1S/C10H15N2O9P/c1-19-6-3-12(10(15)11-9(6)14)8-2-5(13)7(21-8)4-20-22(16,17)18/h3,5,7-8,13H,2,4H2,1H3,(H,11,14,15)(H2,16,17,18)/t5-,7+,8+/m0/s1
InChIKey descriptor GEADDYZDICTQHP-UIISKDMLSA-N

Status Information

Last modified 2011-06-04
Created 2009-08-05
Release status REL
Model PDB code 3IJK
Processing site RCSB