PDB Chemical Component S12

Ideal Model

Chemical Description

Name O-[(S)-hydroxy{[(2S)-2-hydroxy-3-(octadec-9-enoyloxy)propyl]oxy}phosphoryl]-L-serine
Synonyms 1-oleoyl-2-hydroxy-sn-glycero-3-phospho-L-serine
Formula C24 H46 N O9 P
Formal charge 0
Molecular weight 523.597 g/mol
Component type L-PEPTIDE LINKING
Nonstandard Parent Id SER

Chemical features

Atom count 81
Chiral atom count 2
Chiral atoms C3 CA
Observed leaving atoms OXT H2 HXT
Bond count 80
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) O-[(S)-hydroxy{[(2S)-2-hydroxy-3-(octadec-9-enoyloxy)propyl]oxy}phosphoryl]-L-serine
Systematic name (OpenEye OEToolkits) (2S)-2-azanyl-3-[[(2S)-3-octadec-9-enoyloxy-2-oxidanyl-propoxy]-oxidanyl-phosphoryl]oxy-propanoic acid

Chemical Descriptors

Stereo SMILES (CACTVS) CCCCCCCC/C=C/CCCCCCCC(=O)OC[C@H](O)CO[P](O)(=O)OC[C@H](N)C(O)=O
SMILES (CACTVS) CCCCCCCCC=CCCCCCCCC(=O)OC[CH](O)CO[P](O)(=O)OC[CH](N)C(O)=O
Stereo SMILES (OpenEye) CCCCCCCCC=CCCCCCCCC(=O)OC[C@@H](CO[P@@](=O)(O)OC[C@@H](C(=O)O)N)O
InChI descriptor InChI=1S/C24H46NO9P/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-23(27)32-18-21(26)19-33-35(30,31)34-20-22(25)24(28)29/h9-10,21-22,26H,2-8,11-20,25H2,1H3,(H,28,29)(H,30,31)/t21-,22-/m0/s1
InChIKey descriptor JZWNYZVVZXZRRH-VXKWHMMOSA-N

Status Information

Last modified 2020-06-17
Created 2012-03-29
Release status REL
Model PDB code 4EAX
Processing site PDBJ